RNA id: TU91487


Basic Information

Item Value
RNA id TU91487
length 891
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00014825
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 33070249 ~ 33119328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgaCGGAGGAAGTCGGGGAGAAAGATGAATGAGTCGCGCGGGGAAGATGTAGGTTTAGATAAATGTTGTGAACAACggaatgttttccttttggCTTTGTtagttatgtaaaatgttttcctgagcGTTAATTTAGTTCTTAAGAGATTTCAGACACACAAGGATTAAAGACTTGTTGCTGACGTGTGTTTTTTGGGCTCGAGTCGCCGGcgccagtgtttgttttgttgaatttaaACCAATGGCGATCAGGACCAGAGTTTCCACTGAAACCAGAGCAAGATGCCGATGGAGTCTTCAGACAGATGCAACCAAAGAAATGTCTGGGCACTAAACAAGGGGACATCAGGAAGACTCAACGGAATATTCAACGAGCTTCATTACcagctgaaggagaaggaggacacCAGCCCTTCATCTGGACACtgtgttatttaattgttaattgccCCGGGACAGAGGCGATCAGGTGCCATTTTTATACACTTGCATGTGTTTAGAGCTTCCACTGGACCTGTGCGTGTCTAGAAGTCATCTGTTTATTACGGCAATTCATTCACCTTCTGCAAGTATATACATGGTTTTATGTTATTGCTCgttttattgttagttgtacttgttaagttgtagtttttagcaaaagctatacagtgctgtgacgagatacattcagaaaacagtgcagcGCCCTGTAGCGCAGTCTTCCAagtgtattgaaataaaaaaaatcaatatggCAGAGCAAGTTGGTGATGGCACAGATTTTGATTGTGactgagttttagttgatagttactgttcattgtttattatagcgtttcagtgcattttcatttgcgttaactttgtattatttgtatttgttttatttgtattttagtgtttttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91443 lncRNA downstream 279851 32789023 ~ 32790398 (-) True G73187
TU91439 lncRNA downstream 358546 32711247 ~ 32711703 (-) True G73184
TU91438 lncRNA downstream 359204 32710797 ~ 32711045 (-) True G73183
TU91437 lncRNA downstream 360134 32709844 ~ 32710115 (-) True G73182
TU91436 lncRNA downstream 361966 32708013 ~ 32708283 (-) True G73181
TU91497 lncRNA upstream 175813 33247337 ~ 33247621 (-) True G73232
TU91509 lncRNA upstream 247901 33319425 ~ 33319625 (-) True G73242
TU91512 lncRNA upstream 294184 33365708 ~ 33366083 (-) True G73245
TU91532 lncRNA upstream 574409 33645933 ~ 33702805 (-) True G73259
TU91533 lncRNA upstream 707469 33778993 ~ 33779193 (-) True G73260
AMCG00014824 mRNA downstream 263956 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014823 mRNA downstream 276824 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014818 mRNA downstream 416829 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014819 mRNA downstream 421254 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014820 mRNA downstream 428317 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014826 mRNA upstream 56154 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014828 mRNA upstream 1492962 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014829 mRNA upstream 1839069 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014830 mRNA upstream 1871451 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014832 mRNA upstream 2101345 35172869 ~ 35180639 (-) True AMCG00014832
TU91480 other downstream 263954 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 451100 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 455443 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 806822 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3671944 29389290 ~ 29398305 (-) True G72477
TU91607 other upstream 1698059 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 2509102 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 3029834 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 3182250 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 3301627 36373151 ~ 36393493 (-) True AMCG00014845

Expression Profile