RNA id: AMCG00014831



Basic Information


Item Value
RNA id AMCG00014831
length 1140
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00014831
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34691085 ~ 34931860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGCACTATCTCCGAGAGCACCATCCCACAGAATTTGTGGACATGAATGTGTTTACAGAATTTAAAAGAATCACTGCCATTGACCTCAAATCCACTTTTATGTCATCGCTTGATCATCATACCAATACCCTTATCCGGATGTTCCGTGCCAAGGGTGGAGACCTTGGAGACAAGATGAAGTGCCTTATTGATAAACTTGATGAGCAGGCACAAGTCCAGGGACTCCGGGGTTGCCAACTGAGGGGGCCcggctcttcctcctcccctgCCCCCTGCAAACCCGCAAGTTCCTCTTTACCTCCGGGTCCAGCTGAGGGGCTGGCCCTGGTATGGGCGCAGATGAACGATCAGCAGCTCATAATGCGCTTCGTCCTAGCGTCCTGGTTAACAATAACGACATCCCCCAGTGATCCAGTAAACGAAGGCATGCCACTTGGGCCCCAGCTTCGACTGGAGCTCTATCATGAAGCTTTGCTGTGCCTGTTGCCCCCGATCGAAGAGAGATCGAAGCACCAGGAACTCCCTGTGCCTTCCAAGTGGGATCGCCCCATTCAGAACCCAACCCTACCAGGCCCCAGCACCAACCCTGCCCTGCCAGGCCCCTGCACCAACCTGCCAGGCCCCAGCACCATTCCAGCCCTGCCTAGCACGAGCTCAGACACAGACCTGCCCAGTTCTTATGCTAGCACCAGCTCACCCTTGCCCAGCAATACCATTGCTGACAGTGGACTACCAACTCCAGAGGACATCCGGCCATATCCAAAAGCTGgcttatttttaaagcaaagccTTTATGGAAGAGTaatcTATTTCAACCCTTTAGTGACCTGGGTTACACCTTACCCATACCTTAAGACTGAGatCAGGAGCACCACCagcatgatgatgatgatgatgaagatgacaCAGCCTGAAGCGATCCCCGCAAACAGCGCCACCTCTGAGCCGATGATGCTTGACGACTGTCCCCCCTCATCATTACCATTTTGGCAAAGAGCCAAGCTTTTGACCTATGACATCAATCTAAGCAACAATACCCAATTTTACCCTGAGCTGGTTCTCAAAACAATGACTGCCCTGTCGTCTTTAGTATTTCATCACGACACAATGCTAGGAATGCGTTTGTGGGAGCACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91600 lncRNA upstream 80673 34610180 ~ 34610412 (+) True G73321
TU91583 lncRNA upstream 240701 34450155 ~ 34450384 (+) True G73304
TU91576 lncRNA upstream 328137 34362707 ~ 34362948 (+) True G73297
TU91574 lncRNA upstream 397542 34293337 ~ 34293543 (+) True G73295
TU91560 lncRNA upstream 575381 34115346 ~ 34115704 (+) True G73285
TU91640 lncRNA downstream 146799 35078659 ~ 35078896 (+) True G73354
TU91642 lncRNA downstream 237089 35168949 ~ 35169206 (+) True G73356
TU91660 lncRNA downstream 322009 35253869 ~ 35256115 (+) True G73374
TU91667 lncRNA downstream 335784 35267644 ~ 35268081 (+) True G73380
TU91689 lncRNA downstream 458774 35390634 ~ 35412587 (+) True AMCG00014836
AMCG00014827 mRNA upstream 912837 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 1922106 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 1934948 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 2027931 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 2293577 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014833 mRNA downstream 95997 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 439124 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 462450 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014834 mRNA downstream 532141 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014837 mRNA downstream 619297 35551157 ~ 35551807 (+) True AMCG00014837
TU91569 other upstream 451685 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 1324985 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 2129596 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 2936155 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 3694722 30990063 ~ 30996363 (+) True G72787
TU91622 other downstream 10151 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 458774 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 2586248 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3500514 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 3878833 38810693 ~ 38811128 (+) True G74227

Expression Profile