RNA id: TU91914


Basic Information

Item Value
RNA id TU91914
length 2301
RNA type TUCP
GC content 0.36
exon number 6
gene id AMCG00014839
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35580626 ~ 35608677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGATTGGTTAGTGACACAGTAAGTCATACCATGATTGGACAGAATGGCCATGTCAAGCATCGGCCCACCTACTCACTGATTTGGCTATTGGAACTTAAAGGAACAAGCTTGCAGTTCTTCACCGGCTGGTGGATAATGATTGATGCTGCAGTGGTCTATAACACCCAGGAGCAGTTGAATCATGCCTTCCACACATGTGGAGTCTTCTCAACCCTCGCCTTCTTCATGATAAATGCAGTGTCCAATGGGCAGGTTAGAGGAGACGGCTATGGAGAAGGTTGCTTTGGCAGAACAGGTGCAAGAATCTGGCTCTTCATTGGCTTTATGATGATGTTTGGGTCTCTTATTGCTTCTCTGTGGATTCTCTTTGGAGCATATGTTGTTCCTAAGAAGGAAGTGTATCCTGGccttgctgtgttttttcaaaatgcattgatATTTTTCAGcaCACTCATCTATAAGTTTGGGAGAACAGAAGACCTGTGGGCATAATCTCTCAGTCTTCCTCAATTTAATTAAGATACCATTTTCTTCAGTGATCTAACCTCAAACTTACTGAACCTTTGGTTTACAAAAGGTATTATGCCATGGCTTATCAAAACACAGCACAATTGAAAAAATCCCATGTATTCAGTGATATTCCCAggaatgtttaataaaaaatctaaaaaaaaataaaaactttgttaGCTgttataaacaacaataaacaaaccttGTTTATTAGCATTGTTTGtgaacaatgcatttaaaaaaagtcatgTGCAATGACATATTTCAACACAGGGTAAAATTCTGTTTTAGGcatacagtatattgttttttatattccttgagagtgtatgtgcatacacacacagatatatatgtaaaatcaGGGGTGGATCCAGGGGGTGCTCAGGGAGCTCGAGCCCACTGTAAATAACCACACCACTGCGAAGCGTAGCATGGGTTGTTCAAGTCGCTCACACAACCAGCTTTGCCATTCTTGAGTCCCCTTTAAATGAAAATCCTGTATCCACTCCTTAAaatctatatgtatgtgtgtgtgtatatgtataatatatccatataaatacataaatagatagatatatacttCCTTGGACAGATACCAAAATATGTTGCcagtcagattttttttttttttatgttactgtCCTACTGAAATACTGACACAAAGTACATTTGAAAGGGGGcggggtgtgggggtggggggttgaggAGGGGTTTTAGATGTCCAAGGGGTAAACTATTGAaatatgtgtctgtctgtgccatTGGCTATGTTGTGTTTAATATCTAAAGcattttatgtaattgaaaCAAATAACGATGGGAACTACTGACTATTTTCCCTTGATTAAGCCTATTCTTTGTTAAATTTAGAATTAGGTCCtagcttttatattttctccTGTCAATTGGAATAGTGCAGCAATCAAAAGAACCATTTTGAGTTCCCAATAACAATCTAGAATGTCAGCTAAAATTGGAAGCAATGACCACAGTACTATAGTACCACAGTACCTGTACAGTACCTGTGCTGCAAGCTACATCTGAGTCCATGATAGCCAATTTGTAGGCAAGAATATGTAATACCCAGAATGAATTTCTGAATACATCCAGAATGAAAGATCTGATTCTAGCTCATCTTTGCACTATGAATTGTTCtatgaaaaatagaaaacaaaatgtgaaatatctggtCCCTGTGTAATAAATTGATAACAGTCATGTTGTCTTGTAGTTTTACAAGTGTGGTAGCATTGCATTGAATTTGCTTCAATTAAAAATTGCATAGAATGAGATAAACCGgcatttatgattttattctCTGTGTAATGGCATTCTCAAAAGTAGCCAACTCATGACAATCTATACATAGGGTTGTACAAATTAATTACAGGGTGTTTGCAAATAATGACttattatttaagtaaacaaattaagttaattgagAATAGTAGTACAAAGTTTGGGGAATAGCCTCCTGTTTGTGTAAAAAACCTTCATATGAGTCAATTATGCTGTACAGATGCATGAAGTTTTTAgcacttttattatttgtctGCCAAGCaaatattactatatattttaaaatatgattgttcCTGTCACCTGTAGTTGCATTGTTTTAGCATCAACAAATAATGCAAGTATTGCCATGTTAGTTAGATTTTTAGcatagtattaaaaaatataaattccatTTATCTTGCTCTGTGGCACCACATGGTCCGGTGTAAATGCTGgtgctgtgaaataaaatggGTTTCTGATTGTGTGAAATACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91882 lncRNA downstream 115961 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 157491 35340673 ~ 35423135 (-) True G73548
TU91844 lncRNA downstream 220249 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA downstream 220249 35275736 ~ 35360377 (-) False G73533
TU91674 lncRNA downstream 305888 35273610 ~ 35274738 (-) True G73385
TU91945 lncRNA upstream 447319 36055996 ~ 36057458 (-) True G73606
TU91948 lncRNA upstream 585371 36194048 ~ 36194250 (-) True G73609
TU92025 lncRNA upstream 865566 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 1037382 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 1080680 36689357 ~ 36730561 (-) True G73722
AMCG00014832 mRNA downstream 399987 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 620377 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 648980 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014828 mRNA downstream 1015424 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 2146244 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014838 mRNA upstream 26310 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 133857 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014842 mRNA upstream 183671 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 369529 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014843 mRNA upstream 453942 36062619 ~ 36073308 (-) True AMCG00014843
TU91607 other downstream 810647 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2774331 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2961477 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2965820 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 3317199 32263167 ~ 32263427 (-) True G73047
TU91940 other upstream 492681 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 645097 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 764474 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 1716343 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 2170656 37779333 ~ 37783575 (-) True G73916

Expression Profile