RNA id: AMCG00014847


Basic Information

Item Value
RNA id AMCG00014847
length 2115
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00014847
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36464454 ~ 36526810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCCTATGCTACAACAACCAGAAGTTCAGTTCGCGCAGAGATTAGCTTCTAATGAAAAACCTATACGTACGAGAGCCATTAAGAAGCTGAGGAAGTATCTCAGCATTCGAACACAAAAGGATAAAGGAGCGTTTACGAATGATGAACTACTCAAAATATGGAAGGGACTCTTCTACTGCATGTGGATGCAAGACAAACCACTGTTACAGGCGAGTGAAGAGCTCTCTGCTGTCATATCCAATCTGATCCATGCCTTGCAGAATGTGGATACCCaaTTTGTATATCTTGAGACATTTCTGCAGACTATGAACCGTGAGTGGACTGGCATCGACAGACTCCGTTTGGATAAATTTTACATGAGATTCACTGAACTGCTTACAGCTCAGATCCTTCGCAGTACCAGTGGCTGCCCATCAGGGATTCAGTTCCACGTCCTTGATATTTACATGGCAGAGCTTGCAACTGTTGGATCACAAGAGGCCATATCAGGAAGCATCTTCAATGAGATTGTGGACCAGGCTCCCTTTGCTATTGAGGACCTAATGAAGGAGCTCAATCAAAAGGGGAATGATTTGGACTTTGAAGAAGTTGAACATTTAGATCTTTCAAGCACCTCCAAGAAAATCAAAGGACCGCGAGTAAATGTGGCAATATCGAAATGTGACACTAAAGATTCTCTTCCCTACATggcaggaaataaaaatgaaaaagattatGAATCTGAAGATGAGGAATCTGATTTGGAAGATGGTTTTGAACCACAAGATGACAGTGACGGAATAGGGCCAGTGCTTCAGGGCAGGCCTAACAAGCCAGGCCCATTATTCCAAGACCTAAGTGAAGGTGTCTTCCCCCAGGATGAATACCCAGAGGAAGTGTCAAcggatgaagatgatgatgagaTGTTTGGCAGTCGCAAGAGgttgaagaggaggaggaatgaaGTAGTAGTGATGGATAATACAGAAAAAGGAAAGGGGAAAGgcaaaaagaaaactgctgtgAAGACATCCATGCTGCAGGAACAAAATGAATCTATGTTGCAGGACATGGAGCCGATTGAGGCAACtaataccttgaccaagaagaaaagaaagaaaaaaggcaggAGAAAGTCTGAGATGGATAAGAATACATTACTGAAATCTCCTGTGGTGAGCAAAGAACCAGGTCCTGTAGGGTTTACTGAGTCAAAGCTAGTGCACGCTCAACCTTTAGTTCAAAAGGCCAACAAGAAGAAGAAACGGAAACTGGAGCAGGCTGGCCCCGAAGATTATGTCTGTGATGTGACTGGGCAGACAGGGAATGGAGAAAAGCAGAATACAGAGAAGCTCAAGAAAGTGAAGATGCAGGAGTGTCTGCAGACCCAGGAAGAATACAAACAACAAGGTGTCCCTGAGGAGTTGACTTCTTCTGAAATTAAGAGAACGCAGAAGAAGCAACGGCAGATGATTCAGACAGCTATGGAGAGCACACAGGTGCACATCTCTACAGACCACAGAGGTGCAGAAGACATGGTTCCGTTCACATCAGCAACAGCAGAGCAGGAGGAAATGAGCCAAGTAAAAtcgaaaaagaaaaggaagctggTGGAGACTGAGCCCAGCAATCTCAATGGCCATAGAGGAAGCAagggcaagaaaaacaaaaagataattGACAGCCCATCCATTTTGATCTCCGGAAACGCCAAAAAGTCACTCAAAAATCCCAAGTCAAAACCGGAGACTGATTTTGTGAAATTTGAAACTCCCTCCATACCTGCACCATTGTTCTTCAGAAAAGCCAAAGGAAGCCCTTGTactgcagtaaaaaaaacacagggATTTCAGACGCCAAAGTCAGAGTCTAAGAAAGTCACCTTTGGGCTGAAGAATAACAAAACGGCAGAGttcaaaaaaacagacaaaagcatTTTAGTGAGTCCAGAGGGAACATCACGTATTGCTTTTGACCCCACGCAGAAGCCCCTGTTTGGAGTCCTCAAGTCCCCAGCCATTAGGTTGAGCTCTCAGCTGAAGACCATGACTGCCTCCGCAcGGATTCTCAGTCCAGCATTTCAGGTTTCGTTCCTAAAGGCGGTGCTGGTACGATGCAGCGTGTATCGAAAG

Function

GO: NA

KEGG:

id description
K14849 RRP1; ribosomal RNA-processing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91948 lncRNA downstream 270204 36194048 ~ 36194250 (-) True G73609
TU91945 lncRNA downstream 406996 36055996 ~ 36057458 (-) True G73606
TU91890 lncRNA downstream 621463 35434969 ~ 35842991 (-) True G73568
TU91882 lncRNA downstream 999789 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 1041319 35340673 ~ 35423135 (-) True G73548
TU92063 lncRNA upstream 119249 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 162547 36689357 ~ 36730561 (-) True G73722
TU92141 lncRNA upstream 489140 37015950 ~ 37016173 (-) True G73776
TU92178 lncRNA upstream 646120 37172930 ~ 37173171 (-) True G73803
TU92228 lncRNA upstream 991233 37518043 ~ 37518331 (-) True G73851
AMCG00014845 mRNA downstream 73674 36373537 ~ 36390780 (-) False AMCG00014845
AMCG00014844 mRNA downstream 131973 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014843 mRNA downstream 391146 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014840 mRNA downstream 477886 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014842 mRNA downstream 650016 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014846 mRNA upstream 13008 36539818 ~ 36570308 (-) True AMCG00014846
AMCG00014849 mRNA upstream 276422 36803232 ~ 36804839 (-) True AMCG00014849
AMCG00014851 mRNA upstream 404197 36931007 ~ 36944739 (-) True AMCG00014851
AMCG00014855 mRNA upstream 517400 37044210 ~ 37047479 (-) True AMCG00014855
AMCG00014856 mRNA upstream 542061 37068871 ~ 37073768 (-) True AMCG00014856
TU92007 other downstream 70961 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 210267 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 282103 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 855777 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1694475 34769583 ~ 34769979 (-) True G73328
TU92209 other upstream 798210 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1252523 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 1816512 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 1885350 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 1905453 38432263 ~ 38432875 (-) True G74115

Expression Profile