RNA id: TU92952


Basic Information

Item Value
RNA id TU92952
length 424
lncRNA type sense_over
GC content 0.65
exon number 5
gene id AMCG00014914
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39590496 ~ 39591658 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGCCGGGGAAGGTGTCGGGGAGCCGGGCGAGGAGGCTCGGCAGGGCGCAGCGCAGTGCGGGGCCGCTGGGCAGGGAGCTGCACGcgGCCAAGAGGCTGAGAGAGGCAGCCAACGGGAACGACATTGACACAGTGCGGCGGCTCCTGGAGGAGGACACTGATGCCTGCGCCGCCGACGACAAGGGCAGGACCGCCCTGCACTTCGCCTCCTGTAATGGCAACAAGGACATCGTGCAGCTGCTGCTGAGCTGCGGCGCCGACCCCAATCAGAGAGACGGGCTGGGGAACACGCCGCTGCACCTGGcgGCCTGTACCAACCACGTCCCTGTCATCACTACACTCCTCAGAGGAGGTGAGTGAGGGGGGtatgggaagagagagagagagtgagtgagtaagagaaagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92932 lncRNA downstream 19090 39570678 ~ 39571406 (-) True G74446
TU92912 lncRNA downstream 90819 39498703 ~ 39499677 (-) True G74427
TU92896 lncRNA downstream 113392 39463079 ~ 39477104 (-) True G74414
TU92894 lncRNA downstream 136533 39453653 ~ 39453963 (-) True G74413
TU92875 lncRNA downstream 189267 39338330 ~ 39401229 (-) True G74395
TU92961 lncRNA upstream 31949 39623354 ~ 39624793 (-) True G74469
TU93009 lncRNA upstream 108158 39699563 ~ 39702594 (-) True G74501
TU93019 lncRNA upstream 144639 39736044 ~ 39736401 (-) True G74510
TU93021 lncRNA upstream 152723 39744128 ~ 39744359 (-) True G74512
TU93024 lncRNA upstream 162290 39753695 ~ 39753938 (-) True G74515
AMCG00014910 mRNA downstream 53653 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014906 mRNA downstream 211380 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014905 mRNA downstream 305149 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 320252 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 373398 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014915 mRNA upstream 1209 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 49006 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 57399 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014920 mRNA upstream 171165 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014924 mRNA upstream 229158 39820563 ~ 39822089 (-) True AMCG00014924
TU92854 other downstream 330136 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 670143 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 945958 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1099556 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 1157621 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 46494 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 310065 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 343488 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 353325 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 393289 39984694 ~ 40012081 (-) False G74593

Expression Profile