RNA id: TU84672


Basic Information

Item Value
RNA id TU84672
length 1923
RNA type TUCP
GC content 0.52
exon number 2
gene id G67801
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1879091 ~ 1881041 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCCACTGCGGCGTGGGGGACGGAGCAGGACGGGGGCTGTGGGACCAGGGGTCAAGAGCCCTTTAAATAATTGAAGTCtttgaagcacagaggataaatatatttatttaacgaGCTCAGAAGAAGAGGGGCAGCCCTGCAGTGAGACTTAACTCTTAGAAGAAATGAGTGCAGCTTTAAAGGGAAAATGACAGAGGGTGCTGCGACTGTTCATTcaatcaaaggcttcaaaagCTGCAAGTTCTGCAAAGCGTGTGGCTGCTCTTCCGGAGGAGGGAGTCATCGTGtgttgtgtgcgtctgtctgtgtgtgttgtgtgtgcgaGGCCAGCGCCATGTGCAGCTGAGCACGGAGACCCCAATAAGGCACCAGTGTGGGtaagaaaagcatgttttaatacTGATGCCACAAAATACAGCTTCTGTGCAAAAACAAACGAACAAGCCAGCGATCCGTATGATTCCAGTTCGCAGTGCGAGCACAGTGGCCGCACCTCGGCCACACAAGGAACGCAGTGAGGCGCTGTTAGAAACACACGCGTCTTATGAGAAGCCTGTCGACAAGTCCACCcctttctgtgtttgtggtACTGCACTCAGAGCGGAGCGGGTTTCAGCGCTGCCTGATCCCTGCTTGTCCCTCGAGGGAGGAGTGGTGGACAGGACAACCCTGTCTCCACTGACACTCTCACACTGGcacagccctgtctccactgacactctcacacacagccctgtctacactgacactctcacacacacatatccgGTGCGGTTTGGAGCTCAGGATTCCACACCGCACGGATGAGCCCGCTGCGCCAAAAGACatggggccggttgcataaaactatatcagactggtcttaatttgacagaccagtctaatgcaagttagtcagttgtGTAAAATTAAGACTAAGACTTGGCCTGAAAAGTCCgcctcctcacccccaggctGACTTAAAATGTGTCCAACTTTCCATTGAATCTGCTGGCCTGAGACTACAGCGACAGTCACTGATGCTGAGGGGCAGAGCCTCCCATTGGTTCACACCAGCCCCCGTCCCGCCCACCAGCGATCCCCCAAAACATGAGACTCCGCCCCACAGACTTCAATACCCAATCCTGTGGCCTGTACGTTTTGAGGGCGGTCCTCCTCCAGTACGAGGAGATTCTGTCGTTTCTGCCCGTGTTTTACAGGCCACGCACACGTTTCCCTTCATTATTTTATCCCACGCCTTGTGTTTGAGTATATACCTCTCTACATTATATAACAAGCACAGATTTTCTGTTACTGTGAAATGACTGGGATTGTCAGTTTTAGAGAAGCGCCATGTTTAGTTTTACggtcttaaaattcccagaatgctttgcgtTACTGACCAgtaagacaaagacttagtctaAGTTTATGCAACTGGACCCAGGTTTCGCGACACGGGAGGCTTTACTGATCTACAGAGGGGTTACATCACCTGTAGCGAGCACACGTACATGATGAGCcctattacatacatacatacttacacgcacacgcacatgcacccctgtccacactgacacactcacacacaggggGTCCTGGTGCAAAGCAGACTGCGCAGCTcccacagcccagcccagcctaGCGAGGGGTTTAATTATTGGGTCAAGTCCACTCCAGTGGAGCTGTGGTTTGATCCTATTGTCCAGTCTAGCGTGGCAGTGTTCTGATTGCACTGTCCTGTCCAGTTGGTTCCAGTTGGTGCGGGCAGGGTGTCTAGTCTGGATGGTCAGTGGTGTGGGCAGGATGTCCAGTCCAATGGGCCCCAGCAGAGCCAGGCAGGGCGCCCGGTTCCTCACAGCACGAAGGACTGCGTGTGTTTAAAGTCCTGAGGAGACAGACTGGGCATTAGAGCTCTATTAATCATGCACTGACCACT

Function

GO: NA

KEGG:

id description
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 36646 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 57333 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 602875 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 628777 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 856278 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 196262 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 267408 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 452450 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 469088 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 865203 2746244 ~ 2755484 (+) True G67983
AMCG00014103 mRNA upstream 131 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014102 mRNA upstream 9649 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014104 mRNA upstream 41084 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014101 mRNA upstream 45731 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014100 mRNA upstream 65793 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014111 mRNA downstream 19421 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014106 mRNA downstream 40298 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014112 mRNA downstream 127561 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014113 mRNA downstream 143557 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014120 mRNA downstream 202385 2083426 ~ 2113366 (+) True AMCG00014120
TU84663 other upstream 40966 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 394998 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1771969 58449 ~ 107122 (+) True G67577
TU84682 other downstream 19179 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 245831 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 825799 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 825799 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 825799 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile