RNA id: TU84714


Basic Information

Item Value
RNA id TU84714
length 472
RNA type TUCP
GC content 0.60
exon number 2
gene id G67832
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1900640 ~ 1902615 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTGTTGAAAAAATACCTTTATTTACAAAAGGTTGGAGGGAAAGAAAAgtcataaatatatgaaaagctGCTCTCCTGTGTCCGCGGTTCCTGCCAGTCCGTGTTCAGCTCCCCGCCtggcgtgtctgtgtgtccgcCGACAGACAGTGCCCCTCCAGCACCTGTGCTGCTCCTGGCCCTCAGTCCTCCTTCTTGttcccctcttcctcttcctctccctcgtCCTCCTCCTGCTGGGCCAGCAGGGCCTCCCGGGCCCGCCTCTTCAGCTCCTCCCGCTTCTTCAGCTCCGCGTCGGCCTTGCGGCTCTGGTAGAGCTTGACTCCGGCGAAGCCCAGGCACAGCAGCAGCGTCTTGGCGGCCAGGATGTACATCAGCAGGGGGAAGTTGTCCAGGGCCTGCGGACACAGCAGCACCGAGGCGTCAGCAGGGACACCCGATCCACAGCACTCCTGCCACAACAACCCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84715 lncRNA downstream 17690 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 78881 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 78881 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 334300 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 802661 1097656 ~ 1097979 (-) True G67691
TU84744 lncRNA upstream 39412 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 154234 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 183496 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 192452 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 192691 2095306 ~ 2095631 (-) False AMCG00014119
AMCG00014109 mRNA downstream 1731 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014108 mRNA downstream 15208 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014105 mRNA downstream 27218 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014098 mRNA downstream 330711 1564778 ~ 1569929 (-) True AMCG00014098
AMCG00014097 mRNA downstream 362435 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014107 mRNA upstream 801 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 3535 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014115 mRNA upstream 126975 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014117 mRNA upstream 129626 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014114 mRNA upstream 130097 2032712 ~ 2037821 (-) True AMCG00014114
TU84719 other downstream 8087 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 17690 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 29486 1869850 ~ 1871154 (-) False AMCG00014105
TU84685 other downstream 31192 1866394 ~ 1869448 (-) True G67813
TU84703 other downstream 36947 1859542 ~ 1863693 (-) True G67824
TU84738 other upstream 14112 1916727 ~ 1918182 (-) True G67843
TU84851 other upstream 637702 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 738444 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 922947 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5475473 7378088 ~ 7380780 (-) True AMCG00014271

Expression Profile