RNA id: TU84719


Basic Information

Item Value
RNA id TU84719
length 491
RNA type TUCP
GC content 0.58
exon number 1
gene id G67835
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1892063 ~ 1892553 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACcacattttttccctttctttagTCTATTTCTCTGCTGGTGGTGATTCATTTGAGCATGACCTGTATATGCATGACCAGTTTGTATGTCggggtgacaggtttccatctcccgggttccggcggagagcaactgaaggccctggcctatatggacgacGTGGCCGTGGTCTGCACGGACGCGCCGTCCgtggccagggttgaggaactgctggacggcttctgcagggcgacgagggccgctgtcaataaggccaagagcgaggtctacctctccaaggcatggcctgtcggccggggcccgccgaccgtgttccctgtgaagccgtctatcaaggttctggggatcacgatcgacgggaccaacacgggcacccggagctgggaggaagctttATCTAAGGTCCAGaggaagatccacggctggagcacaaggaccttgacgatggctggtaaggtgctggtcgtaaaggccatcctcttcccgatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84715 lncRNA downstream 9113 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 70304 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 70304 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 325723 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 794084 1097656 ~ 1097979 (-) True G67691
TU84744 lncRNA upstream 49474 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 164296 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 193558 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 202514 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 202753 2095306 ~ 2095631 (-) False AMCG00014119
AMCG00014108 mRNA downstream 6631 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014105 mRNA downstream 18641 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014098 mRNA downstream 322134 1564778 ~ 1569929 (-) True AMCG00014098
AMCG00014097 mRNA downstream 353858 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014090 mRNA downstream 437446 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014109 mRNA upstream 3112 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014107 mRNA upstream 10863 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 13597 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014115 mRNA upstream 137037 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014117 mRNA upstream 139688 2032241 ~ 2032429 (-) True AMCG00014117
TU84716 other downstream 9113 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 20909 1869850 ~ 1871154 (-) False AMCG00014105
TU84687 other downstream 22615 1806669 ~ 1869448 (-) False G67813
TU84714 other upstream 8087 1900640 ~ 1902615 (-) True G67832
TU84738 other upstream 24174 1916727 ~ 1918182 (-) True G67843
TU84851 other upstream 647764 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 748506 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 933009 2825562 ~ 2829144 (-) True G68088

Expression Profile