RNA id: TU84833


Basic Information

Item Value
RNA id TU84833
length 265
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G67911
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2350125 ~ 2373329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgtgattcaaaggatagattatgatcacagatgacacccaggtttcatgccatctccttaggggagaaattaaagttatcattactcagttttgttagtgcatgatgaacagttcgatttttgtctcctaaaattaggacttctgttttgtcagaattaagcataagaatttttttttgtcatccatgttttaatctcagacagacagcaaattagtttttctaggtctatggtattgttaggatttactgacagatataat

Function

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84811 lncRNA downstream 225218 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA downstream 254494 2095306 ~ 2095631 (-) False AMCG00014119
TU84803 lncRNA downstream 263004 2086111 ~ 2087121 (-) False AMCG00014119
TU84795 lncRNA downstream 290634 2056849 ~ 2059491 (-) True G67881
TU84744 lncRNA downstream 407705 1942027 ~ 1942420 (-) True G67849
TU84881 lncRNA upstream 234940 2608269 ~ 2608479 (-) True G67953
TU85010 lncRNA upstream 323479 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 334488 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 385156 2758485 ~ 2758840 (-) True G68070
TU85032 lncRNA upstream 391861 2765190 ~ 2766174 (-) False G68073
AMCG00014138 mRNA downstream 10938 2325102 ~ 2339187 (-) True AMCG00014138
AMCG00014136 mRNA downstream 71142 2268517 ~ 2278983 (-) True AMCG00014136
AMCG00014133 mRNA downstream 172821 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014118 mRNA downstream 195379 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014119 mRNA downstream 225172 2085941 ~ 2124953 (-) True AMCG00014119
AMCG00014134 mRNA upstream 158625 2531954 ~ 2540358 (-) True AMCG00014134
AMCG00014132 mRNA upstream 169589 2542918 ~ 2548184 (-) True AMCG00014132
AMCG00014131 mRNA upstream 189204 2562533 ~ 2570391 (-) True AMCG00014131
AMCG00014141 mRNA upstream 201134 2574463 ~ 2576803 (-) True AMCG00014141
AMCG00014143 mRNA upstream 241926 2615255 ~ 2615530 (-) True AMCG00014143
TU84738 other downstream 431943 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 447510 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 457572 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 467175 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 478971 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 166988 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 267730 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 452233 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5004759 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5044269 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile