RNA id: TU84933


Basic Information

Item Value
RNA id TU84933
length 2739
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G67994
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2782339 ~ 2802044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATAATAAAGGCTTTGTGACTCAGTCGGGTGTGAtctgttgtttttacaaaagtTAAGGCAGCCCTCATCCCTCCTCTGTGGTGTGTGTCTCCTGTCGAACATTTCCAATAGAAACTGAGTTTAAAGGCTTCCAGAACAGAAGACAGGAGGCACATCTTCTCAGTCTAGTACTTTATTACTATCAACGTTGCTGCACTGGGGAACCAATGGACATGGGGGGTCATGTTTAGAGTCTTTACTTCCTGAACTCTCTGacctgattaaatcaaaccttCTCTACATTCAGCTCCACTGAAGACAGGCCTTTATGTGCACTGAGCCTCCAGCACTGGCCAGTGAAAATACACAGAGACGAATACTTGAAAGGTTTGTTTGGGAGATTTTAAACTCTGTAAAACATGATCTATTTCAGTGGGAGTTGTTTTCACGTCAAACAGATCATTTCCCAGAAAAGGTCACCttaaacatttctgaaagatCAATTTATCGCAGAGACTGTGGTGtcaacatatttaataaacaaatcccCTAAATGACTATGTATAATTCATATagtgaagaaaacacaaaaccaaacacataCAACCATGAGAATATGTGCAGAATATCGTATAACCTCAACACCAGTGACAAACATTCACCTACTCAAATGGCCAAAACACGAGTTCACAATCTGTTTAAGTATTAAGTGATTAATTAGTTTCaataaaaaaggacattttaaataattcaaacatcAGGCAGCACAGTAAGCAATTCTGGTGTTCGTGCACTTTTAGCTGTGATCACCTGATGACCCActgatttcctttctttttctggtatgttaatttctttaagtTTGCTCACCTTaggtccctttttcaggacacatTCAGGAAGCacatattttaaactgaaatcatGAATCCATACATTGCACAttgtgtttttacatattttatactaTTTCTATATTATCACCTGAAATGATTACATCGCTTATTACAGGTGACCAATGAGTTGGGTTCACACAGTAAGTAATTGTGATATTATCCAGCAACTCAACTGAACTAAAATGGGAGAATTTGTTGAAAATCTCTACAGAAAAATCCATGGGAgaacaaatcaatttaaaatgaactgttAAAATATGACTTACAGCTTCCCATTCTAATTGTTTCCTCCAAAGGGTTCTAGCATTGATATTTGAAAGACTGCATTCAATAAGtgtaacattttcttaaaaaaaaaaccttaagcACAAACTatgtgcacacatttgtttacatcccaATTAGTGAATATTTCTCCTTtaccaagataatccatccacctaaCAGCTGTGGCACATCAAGAAGCTGATGAAAcggcatgatcattacacaggtgcggCTTGTGctgggacaataaaaggccgcTCCAAAACGTGTAGTTTTGTCATACAACACAATGCCATGTGTCTCCAGTGTTGAGGCAGTGTGTGATTTGCTACcaactgcaggaatgtccaccagagctgccgTCGGGTCCAGACCCTGGTGTGGATGAGCCGctgatgagcttccctgagacgctttctgacagtttgtgcagtgACTGGTTGTGTAGACCCACAATGTCAGCTGACTGGGCAGCTGGTCTCAGATGATCCTGCAGCTGAAGGAGCcggatgtggagtcctgggctggcgTGGGACACGTGTCTGCGGTTGTGAAGTTGGTTGGATGTGCTGCCAAATTCTCTACAATGTCATTGGAGGCAGTTTGTAGTAGAGATATTAACCTgcaatccatagattagggcctaatttatttatttcaattgactaaTTTCTTTACATAAACTAACTCTGTAAAATCGTTGAAACTGTTGCATGTTGCCCACCCCAGAGGGCTAACAGTGCACCTACACCCCAAGGTGTGacgagccatcgccacccaagggctgttgatgttGACGTTCACGTTCCACACCCGAGGACCGGTGAGAGGCCctcaccagagggaagaccacagccagcagcaccaccTGAGAACTTTCTCatcttcttgctgctgtaacataATTCTACTGCTTGGAGGGgcggcaaccattaggcctgggtcttaagccgtggacccccagagatacattttcttctaaaacagcctgccatccataggagtttattctctcctctgtgcctcatggtttatttcatgttggtatattttatatttgtttactttattttagtttaaagtgttaaaggtttatttatttgatttatgtttatcaatctgtaaagtgctctatggctaccctgtgaagggtgctatacaaataaaaatggattgattgttGAGTTTATATTTCTGTTAAGTGTATAAACCGTTAAGATCTCATCTTAGTACAACCATAGCAATAATAAAAACGCATTTCAACTTCAGTTCTACTCAACATCTTGATTCTGATTTCTCttcttttagtttaatttatccaagtcttttccttcttcttgtGCTGCagtgacaaaacaaacatggtCAGTCTTCCCTAAATTAAGGCCCAGTAACACAATACTCACACAGTACACACTTAGGAGTTGTGCTGTCAAAGGGAGGCAATGATACTAAAATATTGCTGCCTATTGAGAAATACACTACAGAGGGCTACTGGGGGACTGTTCAGTAAAGACCACTACATTACCCTGGTTATTGTCAGATCCTGTCAGAGGAACACCCTCATCTCTGGCTCCACCTTGACCATACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84927 lncRNA upstream 13502 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 26855 2746244 ~ 2755484 (+) True G67983
TU84830 lncRNA upstream 409034 2350129 ~ 2373305 (+) True G67908
TU84829 lncRNA upstream 448395 2333491 ~ 2333944 (+) True G67907
TU84819 lncRNA upstream 633685 2148449 ~ 2148654 (+) True G67899
TU84995 lncRNA downstream 174170 2976214 ~ 2976510 (+) True G68046
TU85148 lncRNA downstream 422530 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 424815 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 572793 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 573541 3375585 ~ 3375789 (+) True G68167
AMCG00014147 mRNA upstream 3743 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014146 mRNA upstream 72010 2707815 ~ 2710329 (+) False AMCG00014146
AMCG00014126 mRNA upstream 221162 2558599 ~ 2561177 (+) True AMCG00014126
AMCG00014130 mRNA upstream 225771 2549354 ~ 2556568 (+) True AMCG00014130
AMCG00014128 mRNA upstream 239941 2539703 ~ 2542398 (+) True AMCG00014128
AMCG00014149 mRNA downstream 17498 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014161 mRNA downstream 107385 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014152 mRNA downstream 121356 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014163 mRNA downstream 194401 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014162 mRNA downstream 242294 3044338 ~ 3044745 (+) True AMCG00014162
TU84895 other upstream 72010 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 72010 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 72010 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 72010 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 652194 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1847156 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1847156 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4544151 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4611596 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 7201014 10003058 ~ 10008648 (+) True G69406

Expression Profile