RNA id: TU85014


Basic Information

Item Value
RNA id TU85014
length 1086
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G68061
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2707817 ~ 2710329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTGAAAAAATCTTTATTAGTGCTACTCAGTCCTTGGGTACAGCAAACCCCTGTGGGGGGCGGCCGTCGGAGCCGCTGTCCGAGAGCCCCCTCAGGACGTCAGTCATCGCTGCCACTGTCGGCGCTCTCTCTCCCCGCGGCGATGGCGTCCTTGTAAATGCCGGTGTCGgcctgcaacacacagacacaggagtCTGCACACATTCTTAAAGTGGTGCCGTACAAAGCCTTTGTTTTTCTATACTTCTAGAGTATTTCTGGAATGCAGAAAAATCAATGGATAGATTACACCTACTCTGCTGTACCACCTGTATCTGATCAATGTATAACAATCTCACAGCTgaagacacagacacaaggCCCTTTAAGTTTTAGAAACATGTAAAGGCAGACGCTATTGAGCCCAGTTCATGTGAGGTCAGACACACATTCCCTGGATTCGATGAGCGCCGAGTTTTAAAGCAGCGACTACAGTAATGGGATTTTGCCTTTTTACTCTCCTCGCTACACTACTTTAGCTTCACTCAGCTCTTGCTCAGGGGTAGTTCCTACATCAGGAGACAGTGCAGTTAACACCCCTTCAGAAAGGCTGCCTGCCAAACTACAGCAGCATCTCCTGTCAGCTCCTTAGGATCTGCTACAAGTGTTCACTTGGTTCAAGGAAGAACACTGTTGTTTCACAGAAGTAATGAAGGAGTTCAGGAGGAGCACAAAGCAGGACACACTGTAGCCCTCAATGACTGCTGTTGGGCAGCCAGATTATCCAAGCACCAGAAGCTATAGCACTGTAACACACGACACTGAATGACTGGACTCCTCTGGATGGCACTAAGAGAACGAAACTCAGGCCACAGCCCAATCAGAGCTGCGGCCGTAATTTTGAGAAATAGACGAGCTCACAGAGTTATCTTATTGTTCTTACATCGATGGCTCCTTTCTTCCAGTCCCTCAGGAACTTCTTCACCGCTCGTTTGGGCAGACCAGTGATCTCCACGATCTCCGCCAGAGACTTCCCCCCTTCTTGGTAACCAACGATGAGACCGCGCTCAAAATCGGTCATCTCAGGGTCGATCACCTCttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85010 lncRNA downstream 6658 2696808 ~ 2701159 (-) True G68057
TU84881 lncRNA downstream 99338 2608269 ~ 2608479 (-) True G67953
TU84833 lncRNA downstream 334488 2350125 ~ 2373329 (-) True G67911
TU84811 lncRNA downstream 582910 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA downstream 612186 2095306 ~ 2095631 (-) False AMCG00014119
TU85029 lncRNA upstream 48156 2758485 ~ 2758840 (-) True G68070
TU85032 lncRNA upstream 54861 2765190 ~ 2766174 (-) False G68073
TU85033 lncRNA upstream 54861 2765190 ~ 2766174 (-) True G68073
TU85037 lncRNA upstream 59509 2769838 ~ 2770660 (-) True G68076
TU85038 lncRNA upstream 65930 2776259 ~ 2805164 (-) True G68077
AMCG00014142 mRNA downstream 32407 2667981 ~ 2675410 (-) True AMCG00014142
AMCG00014144 mRNA downstream 54570 2641189 ~ 2653247 (-) True AMCG00014144
AMCG00014145 mRNA downstream 72501 2631658 ~ 2635316 (-) True AMCG00014145
AMCG00014143 mRNA downstream 92287 2615255 ~ 2615530 (-) True AMCG00014143
AMCG00014141 mRNA downstream 131014 2574463 ~ 2576803 (-) True AMCG00014141
AMCG00014150 mRNA upstream 21202 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014151 mRNA upstream 35016 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014155 mRNA upstream 140083 2850412 ~ 2868349 (-) True AMCG00014155
AMCG00014153 mRNA upstream 160132 2870461 ~ 2879884 (-) True AMCG00014153
AMCG00014156 mRNA upstream 170185 2880514 ~ 2892222 (-) True AMCG00014156
TU84998 other downstream 63910 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 165120 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 789635 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 805202 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 815264 1892063 ~ 1892553 (-) True G67835
TU85055 other upstream 115233 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 4667759 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4707269 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5427002 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5445900 8156229 ~ 8158590 (-) True AMCG00014298

Expression Profile