RNA id: TU85111


Basic Information

Item Value
RNA id TU85111
length 3596
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G68124
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3029109 ~ 3032764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGCTCTTAAGGAGACGGGGTGAATAATGACACACTAATCATTAAATGAAATCTGGGCCTGCTTGTCAATACCCAGGGATTCTGCATATCCAGCTCACGTTAACGCTggtttttgtgcattttctgaTTAACAGCAAGAGTTTTCAACTAGACTTATCACGTGACTTTGGTGATACATTACTGTGCAATGCAGAAATTTTGCCGCCAACTTTCCATTTTCCCACACCTTGTAGAGAACACACATTtcagtacaaaacaaagaaataaaacaattaataaggaaggaaggaaaaaataatctaaaaaatgtaacttttattGTTCACATCTCAGACTctttttacattaatacaagCAATTCAGCATATTCAGCGGGTaccaacaatatttaaaatgcatcacgTGAAAGGTTTCTCATTCTGTTCCTTCACTATATTTCCATGTataactgtacacacacacatataaaaaatatgggAACAATATGGTTGCCCAGCACCACAATATTGcatagaaaataatacagaagtACATTTGCACACTAAATGCATGTTAGTTTGAAACAATGACTCCATTCTTCAGCTGTGCTTCTTTTGATTCATGTAAatgctctttttaaaatatcaggAGCTAAAAAATAATCCCAAGAATTGTGAACACACTGGTAactaagaatatatatatatatatatatatataaaataagcacaCTAAACATGACCATATGGTTTTAATCCATTTCTAGTTTCACCACCACCAACTTTTACCTGTGCTCTCCAAGTcttcaacaaatgtatttgtatgatTGAATATAGAGGCTGCCAAAGACCTCGGTGCATAAAGAAGTGCTGTAAACCAAAGACTAACTCAAGACCTAGGGACAAGCTGCAGGATATGTGCTACAGCAAGCTACAGCATATGTGCATTTGAagagaatacaataaaatcaaatacataaaatccacagaaaacaactgggTACAggtcaaatgtttgtttttaaacaattatcAAACATTCAGATACATCTATCAGAGGTCAGGTACACATTGATACTGAATTTGCAATGCATTCTTTTCCAGTTATGCATCTGCTTATATTTATTGGCAGTGAAAACATGTCCCCTCAGCAGAATGAATACGATTTGTCTCACACGATCAACAGCAACATTCTTCACAatcttttcaatatttaaaaacgtTTGACAAATTTACGAGCACGTGTCTCCGTGGCATTCTCGATGCCCAATGATGAAGCTGATGTAATtttcacaagaaaaaacaatgtgctttattatttttgcttttcatacAAATGTTTCCAGCACGAAGAGTACAAATAAACAGATGGACAGCATCTGAAACCTGATGTAGCTATGGAACTATTAAAGAATGTGAAATGCAAATCTTTTGCATATTtcagagacaaaaataaaatgttaagccCTTTTTGACCTTTATTATATTACCTTTATATCagtaagaggaaaaaaatatatataatttttaagtgCTGTTTGTCAGTGTCCTGTTTACGCTCACAGGACACCGTGTTTATAAAGCCTTGCTGGGTTATTTAATGCTGTACTGTCAGGAACAAAAGACAAGTAGAATAATGCCAAACATTCAGGTCAAAGTTCAATGTTACACTTTTATACAGAGACGGACGCTGCTAGCAGGCCTTGTATTAGTAAAGGCAAAAGAAACTTCCCAGGTTTTACAAAAGATGAATGACCAAGTAACACGGACAGTTATGGTTAACTAACTTGGTcatcatttctttctttgtccAAAGAGAAAAAGGTAGTAAAAACAGACgtgttaaatgttttctgaatgaAACTTTTCCACCTTCAAAGCAACGACCGATGACAATGCGATTAAAGATCATTTCTAGCATGTAGTCACTTCAGGATGGCGGTGAGTGCTCAGTGCCTACATCTGATCTACAAACATCTTCCATTATTCGCCGTCCTCTCACACTCGACCCCATGCACAATCTAAATTAGGAGAACTGTGCAGACGGGCGAGTGAAGGAGCTGGCAGTGCCAGGAGGGGGGCAGGGGATCTCTCAGACTGTGCTGGAGTGAAGAGAGACAGATACAACTGTCATTAACACAAAAGATCTATGCTTTAATTGGTTGGCCCACTGAACATGTTATTTAGTTCAGCATGGAATCCTTTTTACAGAGATTTCAGTCTCTGGTTCTTGACCTACAGCATCAGGCGGACAAACTCTCACCAACTGGAGGACTCtggacaaacagaaaaaaacaccagctTATTCAAGATACTGAAAACACGACTGTAAGAAGATTTAGACTTTTAAATTagacttttaaaagtaattaatttgtttctcatCCCATATTACACATcaacatcaatttattttataccaaAATAAagactaatattaatattaatttggttCAGATACAGATATTCAGGGTTAAATAATGTAGAGATCTCCgattagaataaaacattttatatctgGATATTTCTATCTGTAGTTTatgacataaaaatataaattatgataCTATATATCCAGAATCCAATTCCACTAAAAGATCATTGTGTCCCAATCGAATGTTCCCAATTCTCCACAAGGCATGATGAATCGATCAGGAGGTTGATAGAGTAATACTGTCCCAAATAatctcctttatatatatatatattgggaaCATTCGATTGGGACACCATGATCTTTTAGTGGAATTGGATCCTGGATTGAAATCTGGATTTAAAGAAGGTTCATTTAATCTCATTAATCTAATGCAGGTAATAAAGTATGACAATGAATGTTCgagcaaaacaaacagcttgcgtttcaaacataatttattcatgtttaaagCATCTGGACTCAGATTTGATtgagtttctcttttttaatttaacagagtatcaatatattttcagaagaaaTGGTTTCACAAGATGGTGTCGTAACGGTTCGTTGGCGACTCTGGTTGCTTCTGGTTGAACTCCGTGACGGTCGGCTCCTTTCCTCGACTGCTGTGGAGGTTTATTCCTGCCTTCCAGCTGTGACAGGCCCACGCAGCCTCGGCATATAATCCTGTCCCTTTGTTGTCGTCCTCCAGAACATCTGCCCTTCTTTATAAATGCGTGACACAGCAGTGTTTACTTGCCGACTCCTCTCTCTGTGACAGAAGCACCGCGTCATTTGGCGACCACAGTCCTGCAACTTTAAACGCCGATAGAGGTCCCCCCATCTGTAAAACCCAGAATGCCAGGCTGAGTATGTGCATGCGCTgggtttgttttccaaaatctGCTTCATCTCTTcggttttcattttctgtactgATAGAAATCTACcttcaccaaaaaaaaagaatgaaaaaaaagtatatggACAAAAAAAGTCTCTGGTCAACCAGGAGAAAGTCTTTCAGACCTTTCAGCTCATGTCTTAGAACTGGATTAACGCGAACGCAGCAGAAAAGACGTTCTTTATTAGTTTCAGTGTTGGGACTGCAGGGACAGGGGCAGGCGGGGCGGTCATACGAAAGCTATGGGACGCAGGACATCCAGCTGGGACTCCAGACTGATCCGCTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85038 lncRNA downstream 223945 2776259 ~ 2805164 (-) True G68077
TU85041 lncRNA downstream 227065 2782510 ~ 2802044 (-) False G68078
TU85040 lncRNA downstream 243696 2782510 ~ 2785413 (-) True G68078
TU85037 lncRNA downstream 258449 2769838 ~ 2770660 (-) True G68076
TU85032 lncRNA downstream 262935 2765190 ~ 2766174 (-) False G68073
TU85159 lncRNA upstream 194101 3226865 ~ 3228150 (-) True G68162
TU85184 lncRNA upstream 358224 3390988 ~ 3391380 (-) False AMCG00014181
TU85251 lncRNA upstream 430671 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 924238 3957002 ~ 3957266 (-) True G68304
TU85365 lncRNA upstream 1063451 4096215 ~ 4098475 (-) True G68324
AMCG00014158 mRNA downstream 77054 2945902 ~ 2952055 (-) True AMCG00014158
AMCG00014159 mRNA downstream 88276 2938547 ~ 2940833 (-) True AMCG00014159
AMCG00014160 mRNA downstream 91238 2935605 ~ 2937871 (-) True AMCG00014160
AMCG00014157 mRNA downstream 93957 2930614 ~ 2935152 (-) True AMCG00014157
AMCG00014154 mRNA downstream 124422 2893854 ~ 2904687 (-) True AMCG00014154
AMCG00014169 mRNA upstream 152213 3184977 ~ 3195114 (-) True AMCG00014169
AMCG00014167 mRNA upstream 196416 3229180 ~ 3237028 (-) True AMCG00014167
AMCG00014168 mRNA upstream 217553 3250317 ~ 3251847 (-) True AMCG00014168
AMCG00014172 mRNA upstream 339534 3372298 ~ 3375153 (-) True AMCG00014172
AMCG00014181 mRNA upstream 352993 3385757 ~ 3394754 (-) True AMCG00014181
TU85055 other downstream 199965 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 385202 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 486412 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 1110927 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 1126494 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 4345324 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4384834 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5104567 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5123465 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 5350521 8383285 ~ 8384224 (-) True G69156

Expression Profile