RNA id: TU85168



Basic Information


Item Value
RNA id TU85168
length 205
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G68167
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3375585 ~ 3375789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCAACAGTAATCCTGCAATCCTCCTCAAATCTGCAAATGTCACAAATGTGCCCGACTGACAGGCTCAATCTGGAGATGAAAATGATCTCTCGGGGAGTACACACAGTGGTGGTGACCCTGTACGGTGCACATCTGTAACCAAACTCAAAAGACAAGGAAATCGTAAAGCCTAACTCTCTCCCTCACCATGATGTAAGCCCAGCG

Function


GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04744 Phototransduction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85167 lncRNA upstream 437 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 147459 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 149086 3224574 ~ 3226499 (+) True G68151
TU84995 lncRNA upstream 399075 2976214 ~ 2976510 (+) True G68046
TU84933 lncRNA upstream 573541 2782339 ~ 2802044 (+) True G67994
TU85192 lncRNA downstream 35189 3410978 ~ 3483649 (+) True G68189
TU85329 lncRNA downstream 578577 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 707974 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 751687 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 917537 4293326 ~ 4293526 (+) True G68374
AMCG00014171 mRNA upstream 4641 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014165 mRNA upstream 153664 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014166 mRNA upstream 199530 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014164 mRNA upstream 209368 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014162 mRNA upstream 330840 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014170 mRNA downstream 1903 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014174 mRNA downstream 15818 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014175 mRNA downstream 22502 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014176 mRNA downstream 58368 3434157 ~ 3452490 (+) True AMCG00014176
AMCG00014173 mRNA downstream 86279 3462068 ~ 3471988 (+) True AMCG00014173
TU84895 other upstream 665256 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 665256 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 665256 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 665256 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1245440 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1273411 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1273411 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3970406 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4037851 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6627269 10003058 ~ 10008648 (+) True G69406

Expression Profile