RNA id: TU85192


Basic Information

Item Value
RNA id TU85192
length 1570
lncRNA type read_through
GC content 0.46
exon number 2
gene id G68189
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3410978 ~ 3483649 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttaaaacaggtttcGTCCTTTAATGAGCCGAACTGTCAAGGATACAGCAGTAACACGGGATGGAGAATGCAGAGATACACATGGCGACTGCAAGAGACGAGACACGCAGACGCCAGGACAGCCAGGGGAACACTTATGCCCTAACTACAGTGGAGCTGaggtacagacacacacacaacggaCACAGAAGCGCTGCTATTACAGATCGGACAGCACAGACACTGCATTgagaagctgtttttatttgtgtgtcctGGCGTAGGTCCCTTTGGAGATGTCCGCACTGCACGAGGCTCAATATTACActctaaaagaaagaaaacgggATACCACAGAATATATGAACCactacactgaaataaatatgagGAGGTAAGTGACAGGTAACACTGTGAACCAGGCTGGCTCAGAGAATGTATTTGAAGGATCTTATCCACCATGCAGCTGAATATTGGCAGTTTTTAGTTTcctcctttttaaaatgaattcctACCCTGTTATTGTAGTTGATGTCAGTTTGAAGGACATCTGGGAACCCAAGTCCAGCTATCAATGCCACCCAGAAACCAGAAGAACCCTCATCCAAAATACAATCTACATGCTTTAacttgtctatttatttttgttctaaaCAGAAATGGATAAATAATGTTACTGGCATCCGTacctaataaaacaaaatgacaatgaGGTAATCATTGAGTGATGGAACTGCAATAAAGCAGAGAGCAGATAATGAAACACACCCTGGGCTTTCATGTTTAAACCACAGTATTCACTCAACCGTTATTCCAAAATAATTTCTTGTCAGACTAacaacacatatataaatgatgCAACCAAACAGGCACTTATTGAACATAGTGTGACCGTATCACCCCAGAGACGTCCTGCCTCATGAACAGACtgtgaacagaacaaaacaattcaatcaTCAAGTAAATGGACCTTCCAATATGACAATAAAAACCATTCTACATGCTTCACATAGTTTTCAAGGCAGTTACAGTTGTGCCCTGATTCAATAGATTAAAACAacactaaataataattaccCTCTGTGCAACGAGTGGCCGAATACTGTAAAAATGTCTCATTAAACTAAaactccagacacacacacacacacaaatacacccTCTACTGCATCAGACAGCTGGTGTTTGGAAGGAAGTCCTGGACGTAGGTCGCCACTGCTTTGGAGAGGTAAGTCATGGTGCCGTAGCTGCCGCTGGGGGCGCTGTCGTAGAAAAAGGTGCAGATCCCCGTGGCCGGGTCCTGCTCCAGGAAATACTCGCCGGCTCCGTGCACTTTCTGCAACGAGAGGGGAGAAGGCATGAGCTTACAGCCGCCTGGGCCGGTGTCTCAGAGACGGGACAGCGCTGTCACCTCCCTGACAtggcgagagggagagaTCCGGGCGCCCgggtctctccctctcctctaaCCGTCcgcctgcagcagctcctcgaTCTCCTTGTCCCAGTTGTCGTCCCTGTTCTCGGCCTCCGCCACGACTTCGTACTCCTGGAGCTCCTGCTGCAGCTCCTTCTCCCAGTCCGCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85168 lncRNA upstream 35189 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 35830 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 182852 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 184479 3224574 ~ 3226499 (+) True G68151
TU84995 lncRNA upstream 434468 2976214 ~ 2976510 (+) True G68046
TU85329 lncRNA downstream 470717 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 600114 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 643827 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 809677 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 811168 4294817 ~ 4295819 (+) True G68376
AMCG00014175 mRNA upstream 1871 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014174 mRNA upstream 13855 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014170 mRNA upstream 32705 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014171 mRNA upstream 40034 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014165 mRNA upstream 189057 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014184 mRNA downstream 5830 3489479 ~ 3511658 (+) True AMCG00014184
AMCG00014182 mRNA downstream 43368 3527017 ~ 3554734 (+) True AMCG00014182
AMCG00014183 mRNA downstream 75269 3558918 ~ 3559709 (+) True AMCG00014183
AMCG00014188 mRNA downstream 98970 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014187 mRNA downstream 111446 3595095 ~ 3615081 (+) True AMCG00014187
TU84895 other upstream 700649 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 700649 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 700649 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 700649 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1280833 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1165551 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1165551 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3862546 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3929991 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6519409 10003058 ~ 10008648 (+) True G69406

Expression Profile