RNA id: TU85518


Basic Information

Item Value
RNA id TU85518
length 3869
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G68434
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4584474 ~ 4588428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTCTAATATCAAAATAGAGAGATTTAtttgagacatttttttttttctctttctggaaACAGTTGACCTACACTAGACAGGGTGAAGCAGAGAAAAACAGTCAAGGGTTCTCTCCTACACTGGACCTCTGTGACGCTGAAATGAGCGCTGATCGCAGTCTGGGGTTCAGTCTGACacagacaataaaaacagcagaagCCAGAAAGTAGATTTCAGCGAGTGACTAgatgtatgagagagagagaatgggtgAGTCGTCGCATGTTTCGAGTGTGACGGGGAAAGCCAGCGCACACACAGCGACAAGCTTGTGTTTCGATCGAGACGCAGCAAAGCAAGACCCTACCGTGTGACAAAGTGCACTGCACGGGGCTCTGACATGGTTAGCTTTATTTAGACAAATCAGAAGCAGACCTAAAACAAAGCATGTGACCGGTAAGGGTTTAAAGATGCAGTATCCCCACGTAGAACAGACAACTAAACATACAAAGTAAAAGCTAAAATCCCCAACCCCCCTTCCCCAtcaatccaaaacaaaacaacgaaaacaaaaaattaaaacacaaaaggtaGTCGATCTATTTCGGGATCGCTGGGAGGATCATTAGCTCGCATTTCAAGATGGTACACATTGGTCAAAACCCAAATGTTACACTGAGACCTGAGACTGGGACCTTCAGAGTTGTGCACATTGGAACTGAATGAAGCGAATTGCACActgttttaattctgtatttttacaaatacagaATTCAAATTTAGTTTGGCGTCATGTAGAGTCAATTTTCAAAACTTGCCAATTAAACCTTGCTTGTCTGACTGCCTGGGACATACTGCCACTACAAGTACTGTCTTTGAAAACAGTCAAAAAGATACACAGCTTATTTTGTAACGTTGTGTCCAACCCTGAAATGGGACACGTTTCTCAGTGTCATGGTTCAGACCTCACGGTTGTAGTTCTTCGCTACAATAGTCTTAATATGCTTTGGTTTTCACTAATTCAAAAGCATAAAGGCAGGTCAGTTTGAGATGCATTACACAGAACAACATATTGGGATAAAACTGTACTTTGTCTGGCTACTTTCACCGGCACAGGTTGAGCCTCAACCAAAGAGCCATTGACTCCAGGAATGAAGGACACAGTCTCTGTACAAACCCtgcaaagaataaaaaacagacaactGCTTCCACAGACCCAAGACACGACTTCACTTTAGTGCGTTATTCCATCTGTCACGATTTTTGCAGATTATCGTCCTACACAATGATAATTACTTCGATGACACACGAAATTTCAACCGgtgcttttaattttagttttgagtttgaaataatacaaattgctgaagaaaacaaaagacgTGTGTGTGACAGTCCTGAGCTGTTATACATTTGCACAACACTatttgtgaacacacacacacacacacacacacacacacacacacaaatgtagcTACAGCCTTTTTCTGTTGGATGCTGGTTAATATCCTGGATAGAAATCAGAACAAAAGTGTTTAGGgatttgggttttatttaaaaacaaaggtttttaatatattgtacgATTGCCACAGGTTTCAGACACGGCAGCGGCCACAAGTTGATAGATATTTTCAATTTAGTCTGTTTCTTCATAGTTCTGCTTTTGAAGAACACCAACATCTTTAATTTCACACAGGCGTCAGACTGGATTGGAGTCGGGAGGCTGGGGTGATGAACGGAGAAGCTAACCTGGTTTACTGTAAACAGCTGTCTGAGAGCACATGACGCAAAACACAGCACACGGTCTTTCTGCAGCCGAGCGTCAGTAGGATTCAAATCTTTCGACGGAGGCTTCCCAAAATGTCTCTGTTTTTGACATTCACCCCAATACCTGCATGCTTCCACCAACCGCTGGCATAAAGCAATCAGACTGAATGCCCCCTAACTTCCCCCAGTTCCCAATTTCGTCTGAGCTTACTAACCTCAGAAATGCTTTCATCAGACCGAACCGTTTCCAATCCTCACTGGTCCGCATTGTGGGGATTTTGCAATTGCTAAGCAGCTTGCAGTCTGTCTCTAAGCAACAGATTTGTCTTGTATCAAATCCACTTTAATTCAGTCATCTTTCACCCGCTCCTTCTGACAGGAGAACTCCATATTTAAGATGTCCCTTGAATGCCTGTGTGAACAGATTTGCGTCAGCACTCTCTCGTGTGAGATCTGGTCACACTGAGGTCTGATTGACTCTAGACCTCAGTCTTGTTTTCCAGGCCAAGGTATGCTCGGAGATGGCTGGGAGGAGGGACGCTCTATCTGAACTCGTTACTTCGGTTATATCCCTTGTTTCGGCCTGTTCATCCATAAACGTttactataaaaatataaatatttgacaaCATGCTTTACGGTGTCGCAAAAGGACTTTAGACGCTTGTCAACGGGCACCGAGGACCGAAATTTACTATTATAATATCCCTAGTCACGTTTGTGTCGATTTCTATCCAAACTCTGCTGCCCAATAAACAAAACgtgtatttgtttacattcatACAATGGACATCCAGAAGGAACGGTGTAACGGGATGCAGTTTTATACTTCAAGTAGCAGTGAGTGAGTATAAAGGTGGTTTTGAGAATTGGGTTTGAATTAGCTTCACGttattctgaaatattaaaCCGTATCGGCAGTTGACCAGTTTATTGGCAGTTTACGTCTTCACCTTACCGTAACTTTTAACCTTTACCTTTCAAAGGTAGTCTGACGATGCAATCTGACCGACTCCATTCAATAAAACACGAACCCAAGCCTGCCCAAACCTTCTGAAGtccaatgaaaaacattgagGCCCTCATTGACAACATCGCCAATTTAATATCCAAACAAAATCATTTACATTGCATCCTGTGAGAAAGAGATCCAGAAATAGATTTAGGAAGGATACTGcagctttaaaaatgtgtctatATGTGAGTCACCCAAgcaaacttttttaaatttattttttccttttgaaagaaAGCAGTCTGTCCTTGTTTAGCCCATTCTGTCTCCAAAACTGAAGTTGTACATAaaaaattatacacatttgttttcttttttttcctccaaaaaTACACTGGGTTCTTTCCTTGAATAGCGTTTCCCTGTATGAAGCTTCTTGTGCACTGGATTGCTGTGTGTCAAAGCACTTGTTTTTCATCGTTACGCAGTTTTCTTAAGTGCTCTAGAGATACCGAGACCTAAAGCGAGGAAAGATAAACAATCTATCAACAGTTTTACATCCTTTCACTCCCCTCTTGGCAGCTTCTTGGAATAacagataatataaaaagatTTTATCCACTCAAATCCCACGGTTGAAAGCAGCTCTGGGATCTAAATCACACTCCAGCTTCTATCACACAGCGCTGAACCACATTTTTAGAAAAGGGAGAATTTTTGAAGTTTTAATGTCTCGTTCTACTGAAATCCTTCGGGGGGGGGGAATTGACTGTAGTGTCcgaattataaataacaaacatcCTTATTGAGCCGggcgttttatttttcttcGTTTTGGTTTTTTAAGTTCGTTTCAATTTTTTGGCACAACCGTTCCAAATCCACGTTTCCCAAATTCTGAGCGTAATCCGACTGCTCtccaggtctctctctctctctctctctctctctctcctcgacTCAACAAGGTTCACCAGTGACCAGCCGAATCCAGCTGTGAAGGAGAGCGGGTCGGTGATGTTAATATGGTTCCCAGCAGTGCGTTCTACTGGTTCTGGAGCGGTCACGATCGCAGCGAGTGCTTCTCCCCACACATTCATGGTCCATCTCAAACACCTGACCACGTCACTATTTTCGAAGGTCAAGAACACAGACCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85500 lncRNA upstream 34472 4500864 ~ 4550002 (+) True G68422
TU85441 lncRNA upstream 288655 4294817 ~ 4295819 (+) True G68376
TU85439 lncRNA upstream 290948 4293326 ~ 4293526 (+) True G68374
TU85370 lncRNA upstream 452756 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 500510 4083763 ~ 4083964 (+) True G68317
TU85563 lncRNA downstream 59282 4647710 ~ 4648213 (+) True G68473
TU85589 lncRNA downstream 196898 4785326 ~ 4785601 (+) True G68497
TU85603 lncRNA downstream 268601 4857029 ~ 4857230 (+) True G68509
TU85636 lncRNA downstream 862860 5451288 ~ 5451521 (+) True G68538
TU85659 lncRNA downstream 1068822 5657250 ~ 5704009 (+) True G68559
AMCG00014208 mRNA upstream 1265 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014209 mRNA upstream 36067 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014207 mRNA upstream 85518 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014202 mRNA upstream 267795 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014201 mRNA upstream 292925 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014213 mRNA downstream 135226 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014214 mRNA downstream 249295 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014216 mRNA downstream 362902 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014217 mRNA downstream 473404 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014218 mRNA downstream 491081 5079509 ~ 5079783 (+) True AMCG00014218
TU84895 other upstream 1874145 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1874145 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1874145 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1874145 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2454329 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 60772 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 60772 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 2757767 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2825212 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5414630 10003058 ~ 10008648 (+) True G69406

Expression Profile