RNA id: TU85565


Basic Information

Item Value
RNA id TU85565
length 1592
RNA type TUCP
GC content 0.48
exon number 2
gene id G68475
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4649200 ~ 4651964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCGCAAGATGACGGCTGCGGTTTGCAGTGCAGTTACAGTTACAAATTAATGGAAGAGAGACAAACGCAACGAGGATTTATTAGTTACATGTATAGTATTCGTGCTCGGGTCTGTGTTGTACGTTGGCCACCATGGGATGTAATATGTGATCAGCGTCATATTTAACACAACTGCAGCGCGCATCTGTGATGGTGTCTGAGTCCCACGGTTTGTTGTGACTGGGAGAAAACAGGTATTTCAAGATCTTCCGGGTTATTCCGATGGACACTTTGCAAGAAACGAGTATTCGCTTCTCTGTGCTGGTTGATATTTGTTAAAACAGTTGTGCGTCTTCTGGTCAAACATGGGCAAAGGCAAGGAGACCTCTTTGGATTTGCGGCAGAAGGTGATCGACTTGAAGAAGAAGGAACATCTGGGATACAAGTCCATAGCCAAGAAGCTGAACATGCCCCTGTCCACCGTGAGGAGCATCGTGAAGAAGTACGACTCGACCGGACTGGTGGAGAACATCAGGAGGACTGGGAGGCCGCAGAAGCTCCCGGACGGGGTCCAGCAGTACCTGCTCACCCAGGTGATGAAGGAGAAGCACAGCCCcgcggaggaggaggatgaggagcaGCGTGTGCTGGACACTGCGGAGGTGACCACCGCCACCGCGGACAGATGCGCAGACCTTGATCACTCTAAGGCCCGCGAGTGAAGGTCAGGGAGCGTCAGCAGCTCAGCCTGCAGGACGAGGGCCGAACGCAGGGACGGAGCGTGTTCCAGTCCCGTAATGTCCTCTAGCAAGACGCCCGACATTAGACAAACTGACGACGCAAGGCGTGGTCTGCACCCTGATTTCTGAGACTCTGCTTTACAACATACAATGAGATAACGTACCCGTCCTTCTAATGCAGATGGTTAGTTTTGAGtaattcttaaaacaaatatattgcattttcatgGATTGATGGTATGAAACCCAAGAAGGTGGTGTACGACCAAATGGGATTGTGAGAAATGATCAGAACCTCCAATAATGACAGCAGGTGATCAATATGCTTTTCCGAGCGTGTTCGATCCTAGTTGAGTCTGCTGCTGAGAGACGGTGTGGTTCCAGGGTCCTGCTTTCTCACTGGACTTCCCTCCCTCTTGGCTGTGTCGGTTCTGTCGTATGATGCACATTGTGACGATTTCTTCTCTACCCATGGAGTTATGTCTGGCTTAGCACCACCAGTGGGAGAGGGGTGACTGAACCGGGCTCTCACGATAACACGTGTGTCATGTTCCTTGCAGTTGCTGACAAGGTCACAGATGAAATCTACAACCCTGGTACTCGGGTTGGACATATTACTATAATATATGTTGCTAGTTTTAAGCTTTCGACTATAACCTCTTGCGCCTGAATATTAATTCGTACAAGGAGAATATTATCTTACGTGACCATGCAAGGGCAGTTGTCATTGTCATTCGATCTCTAAATCTCTTTTACTCTGGACTCTTTAGCTGAGTCCAAGAATCATAtatgtattctctctctctctctctctctctctctctctctctctctctctctctcatatttcacaactcaataaaacaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85563 lncRNA upstream 987 4647710 ~ 4648213 (+) True G68473
TU85517 lncRNA upstream 60772 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA upstream 60772 4584474 ~ 4588428 (+) True G68434
TU85500 lncRNA upstream 99198 4500864 ~ 4550002 (+) True G68422
TU85441 lncRNA upstream 353381 4294817 ~ 4295819 (+) True G68376
TU85589 lncRNA downstream 133362 4785326 ~ 4785601 (+) True G68497
TU85603 lncRNA downstream 205065 4857029 ~ 4857230 (+) True G68509
TU85636 lncRNA downstream 799324 5451288 ~ 5451521 (+) True G68538
TU85659 lncRNA downstream 1005286 5657250 ~ 5704009 (+) True G68559
TU85700 lncRNA downstream 1127414 5779378 ~ 5782386 (+) True G68589
AMCG00014208 mRNA upstream 65991 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014209 mRNA upstream 100793 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014207 mRNA upstream 150244 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014202 mRNA upstream 332521 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014201 mRNA upstream 357651 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014213 mRNA downstream 71690 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014214 mRNA downstream 185759 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014216 mRNA downstream 299366 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014217 mRNA downstream 409868 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014218 mRNA downstream 427545 5079509 ~ 5079783 (+) True AMCG00014218
TU84895 other upstream 1938871 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1938871 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1938871 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1938871 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2519055 2126872 ~ 2130145 (+) True G67896
TU86015 other downstream 2694231 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2761676 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5351094 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 9684894 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 11023667 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile