RNA id: TU85767


Basic Information

Item Value
RNA id TU85767
length 1788
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G68637
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6054535 ~ 6056347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggttgtgttgtgttttgtttcgtttCTTTTTGGTTGGTTTTCCAGTCATTCCAAGACTGAAACTGGCTCCCAAGGACAAAGGTTTAATGAGAgaattaaacacaacaaaagcCAGTTGTTTAACCTAtgcattgattatttttgttttgtttaaaatcgTACTTATTTTTCgtcttttgttgtgtgtgtgaaacagtgCGCTGGACGCCCTGATAGCcacttttaagaaaaaaaaaaatatatattttaaatccgCCCGATTCTTTGCagtcagttttagtttttgacaGGCTTTCAGTTATGTTTTGTACCTCTCGTGGAGAAGGCCCAGTGGCCGTACTTTAAACACACAGTCCAGCAACAGGAAAAGAAGGAACTGTTTAGAGAGACCGGGGGCTTTAAGAGATTCGCTGCGATCACTGTAGTTCTGGTAACACTTTTGCTACACAGCCCCTCTCTTCATCACAACCGTGCGATTCGGGCCCAGAAGGGGTTACACATGCTGTTCCAATACGAGTGAGGTGAGAGAGAGCCATTAGTCATGTCCCAAACTGTAATTCTGACTGTAACTCAAATTACCGCTAAATTGCTTCTCAATTGCTCTGTGGCCGTGCGTTTGCTGACAGCCTGTGTTTGTGTCGTATGGCAGAGATCAGCAGTCAACTGCCGTCTTTCAAGgcacatataaatatgtgtgtgtgtgtgtgtgtgtgtgtgtggtttacagcttcacaaacacacatggcTTCTCTGAGCACCTCGGTCGACGGGAGTGTGAAGCCGTCAGTATTCCTTTGCTAGTCGTCTGCTCGTATGAAAACACTCATCTTGCCAGACTCAATCTATTGAGGAATTTAAAAGTGGTCCCAAGCCTTCAGAGATGACACATGCGCAACTCGTGTGGTTTCTCTGCGATGCTGCTTTGCATTCCCGGAGACGTGGTGGTTTACAGTTGTGGCGCAAAGCGTCTGTGATGTCCAGCCCCCAACTAACTAATAAAGCCAAATGGAAAAGCCATACGAGACACCAGAATAAACAGATATGCAGCTGCTTAAGTATTTTACTATAAGCTAAATGTAGGAATAAAGCCAACTGTGTATAAGTCGTGTCATATTATAAACAACGCCTACATGTATTTTATCTGTCTGTTCCATCCGAAATGGAGGAGTGCGACAAGTGTTCCTAAGTTCATCTACCATAggaatatgatttttttctttcttgatttaGTCAGTTAATAATGGATTAAGACCGATTTCTATCACCGCACAGAGTTCCCCATGGTCCCGGTGACGTCTCCATACGAGACCGTTCTTCAGATCATTCCTTGCCGTTGgaaattattgttttcaaaaagcaaattCCCCTTTTCAATCCAGGTCGAGTAGTTCATAAACACTTCTGCTCAGCTACAATTACAACACATATAAACTGACCTGAGACGTTTAAAGCATAGGAGCTGGACTCCACTGATATACAGGAGAGAATAATGTACCTGCATGTTTGATGCAACTTATTTAGCATGTATTCATAAGGTTTAAGCTTTTTATTGTCCATTTTGAATCTTTGTGTTGTTCAGACAGGGATACTGAGACGCAAGAGGGCACGGTTTATAAAACCAGAGCACAGCCAGTCCACTTACCTCAACGccaaactgtataaaataatattaaacgtGTATAAAACAGGTGTGAAATGCCAACAGAATCAAatagtatgtgtatatataacttaTTATTGTACATATGCATTAATAAAGTGTATCATTAAAGTATTTCTGATGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85765 lncRNA upstream 41476 6012682 ~ 6013059 (+) True G68635
TU85751 lncRNA upstream 98350 5897070 ~ 5956185 (+) True G68623
TU85700 lncRNA upstream 272149 5779378 ~ 5782386 (+) True G68589
TU85659 lncRNA upstream 350526 5657250 ~ 5704009 (+) True G68559
TU85636 lncRNA upstream 603014 5451288 ~ 5451521 (+) True G68538
TU85787 lncRNA downstream 17370 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA downstream 50694 6107041 ~ 6110306 (+) True G68649
TU85783 lncRNA downstream 50694 6107041 ~ 6110306 (+) False G68649
TU85785 lncRNA downstream 50694 6107041 ~ 6110306 (+) False G68649
TU85786 lncRNA downstream 50694 6107041 ~ 6110306 (+) False G68649
AMCG00014237 mRNA upstream 100 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014229 mRNA upstream 175278 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 279774 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 314614 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 411046 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014243 mRNA downstream 178456 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 675277 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 983407 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 993989 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 1016977 7073324 ~ 7073602 (+) True AMCG00014261
TU85565 other upstream 1402571 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1402571 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3344206 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1289848 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1357293 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3946711 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8280511 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9619284 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU446176 True 2235 lncRNA 0.39 2 CI01000206 603973 ~ 606233 (+)
eurasian perch (Perca fluviatilis) TU263122 False 644 lncRNA 0.49 3 NC_053130.1 14224820 ~ 14227137 (-)
tiger barb (Puntius tetrazona) TU263122 True 3254 TUCP 0.43 2 NW_025047844.1 204040 ~ 207478 (+)