RNA id: TU85805


Basic Information

Item Value
RNA id TU85805
length 2118
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G68665
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6112656 ~ 6114964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAATCAATACAAAAGTGAATAAAACTCACCGTCTCCTTCAATCACGCGGTTGCAGTGGTAGCAGACATCGCCGAAGAGCTGCGGGGATTGAGGGGACAGATTAGACCACCGGACCCGGCTGCGACTGAGCCCGTTTATGTCACACGCAGCATATCTTTGGGCCCAATCAGGAAAAGCTAATTTAGTCCCTCTAGTCTGAGCAGAAGTGTCCTTCACCAGAAACAAACTTCTCATGCAGAGGGTTAGCCGTGTAAACTGTACAGATTGACTTGTTTCTTCTTTCCACCAGTAGGGGGCACCGCAACACAGCTGACCAGCAATAGTTTCTCTCTGCTGCGCTGATAAACGCGGCGTCTcgtacagtacagtatggtGCAAGTTTCTGTCACATCTGACATCTGATAAACAGACCGGAGCAGTTTATCTCGCTGATCTTCAGTGTGACAGTAATAACGACAGTCAGAAAGTTACACACTTGTGATCACAGGGATAAAGGCCCTGCACTGCTCCAGCCCAACCAAAGTTGTTATTATTCAGACAACATGCATCAGTTCCTGTGTCAGCCATTTGGACATGGACTGCACACACAGGTGACATGAGCTACCCATACAGAGACTacacatgtatttgtgtgtcagttctcATTAAGTGTATGATCATCAACACGTAATATGTAAAAGTGCAATTATCatcttgattgtgttttttttcctatagGAGTTCAGGATTGTGAGTCAAAAGGTCTTATTGTAATAGTAATCTTGACGCTGATGACACAGTGAGGGTGTTGTTTGTGCGTTCTGACAAGGGGATGCACTCGAGGCGCCCTACCTGGTTGTAGTGCGTCTCGCAGTAAGCCAGGCCCTTCCTCTCGTAGTGACGGTGTCCGAGGAACGGCTTTTCACACTTAGCACACACAAAATGCTGCAAAAACACGTCACCGGCCCAATGCGTCAGTCAGGGTGCAGTTCACAGCACACATTATTGCAGTCGGGACAGAGCGCAGCAGGACACAGGGCTGGAGGGGCTCAGAGACGCGGCTGTGCGTTTATTGTGGGCGTTTGTTTTGGGGGGCAGGGTTTTCAGGTCATGCTGAGAAGGGTACATTGTTTTTAGAGAGGAGAATTGACAAATCAGGGGTTATAACTCAATTTAACAATCAAGGACCCCCAGCAGGGTGTAAACACTGGTGTCTGGGGGCCCATGGAGGCGCTGCGTCGTCCTGAACCCCTCCCATGTGAAGGGCCGGTGTCGGGGGGGCAGGCAGGGTCAACGGGAAGCTGAACACCCGGTGCAGGGACAGCGCCCGCTCGCTGCCCCGGCCCTCACCATGTCCAAGTGCCTCTCGCAGTAGGCGTGGCCCCCCCGCTCATAGTAAGGGTGCCCCTGGAAGGGCCGCTCACACACGGCGCACACAAAGTGCTggcccagggagagagaggcagagaaacaCGCAGGTAAGGGACGGACACTGAAAAGGCATGTAAGAAGCAAAGGAGCAGAACCGActgagaggaggaagaggagagacaTTAAACACGGATAACAACAATGAATAACAGGATGAGATTCGCCTCCAGCACGGCCAGCAGGTCCATCTCAGTTCTGCTGCTGGTGGCTGACTACTCACACAGCAGCACCGCAACGGAGTCACGCGAACATAAAACTACgaggcattttcttttaaataatatattaaagaaataaataaagcaacagTGTCTTGGGGAAACAGCACAGCCTGGTCGAGCTTATTAGTATTAGTGCTCCATTCATTTCTAATATACGGACAATATGGACTTGTCTCTGGCAATGCCTTtgtgaaaggcgctatatgAAATAAAGGTTGATATTGTTTGACCGTGGGAGAAGCCTGGTTATACTGTGGTGTCAGGGGTCGGGGGTCACGCACCTCCACGTGCCACTGCTTGCCCATGGCATTGACCACTCTGCCCTCGATGGGCCGGCGGCAGGCGCCACAGATGGGAACTCCCATCTTGTCATGGCAGGGCAGGCAGTACAGCTCGCCCTTCAGCTCCCGGGCGTCGGCCGTCAGCTCCTTactgtggagagagggagatggagagagagagagaagtgagggaaaagagtgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85787 lncRNA upstream 2350 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA upstream 2350 6107041 ~ 6110306 (+) True G68649
TU85783 lncRNA upstream 2350 6107041 ~ 6110306 (+) False G68649
TU85785 lncRNA upstream 2350 6107041 ~ 6110306 (+) False G68649
TU85786 lncRNA upstream 2350 6107041 ~ 6110306 (+) False G68649
TU85846 lncRNA downstream 89214 6204178 ~ 6206576 (+) True G68686
TU85863 lncRNA downstream 129938 6244902 ~ 6247049 (+) True G68698
TU85895 lncRNA downstream 598207 6713171 ~ 6714821 (+) True G68728
TU85912 lncRNA downstream 628899 6743863 ~ 6744111 (+) True G68738
TU85947 lncRNA downstream 941743 7056707 ~ 7058319 (+) True G68771
AMCG00014237 mRNA upstream 58221 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014229 mRNA upstream 233399 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 337895 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 372735 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 469167 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014243 mRNA downstream 119839 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 616660 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 924790 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 935372 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 958360 7073324 ~ 7073602 (+) True AMCG00014261
TU85565 other upstream 1460692 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1460692 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3402327 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1231231 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1298676 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3888094 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8221894 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9560667 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile