RNA id: TU86011


Basic Information

Item Value
RNA id TU86011
length 502
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G68827
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7288936 ~ 7289437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttattttcaaatattaaattattttattgacatgaAGACATTTACATCTCACTGTACAGAACAAACAGTCGGGCTGCTacacaaagaacaaatacaaacaacaacaaaaaaaatcgtaacaatttacaaaatatgtaaagatGTGCAGGTGTGTTGGAGAGGGGAAAGCAGGGCAGTCAGTACAGTTAAATAAACACCATCATCTTCAAAACAAGACGCACCGCACATGAACAAAGGGGATATTATACGGCAGACATTCTGGACAAAACGCTGTTAAAACACAGACCTTGTATCAAATGCATTGTGATTGCTTGAACGTTTTCATTTTGGTTGTCAGCGAAATAAAGGAGGACAGAAGGCGCTATAAAACCCGAAAGCATGCTTTCAAGACATGGCAGTATGCAAATATGgccacaacaaaaaatacattgagaaaatataaagaaaataccttttaaaatgcacgtatacatatgaaaatatatttcagcaaaCACTGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86010 lncRNA downstream 601 7288063 ~ 7288335 (-) True G68826
TU85950 lncRNA downstream 230617 7054777 ~ 7058319 (-) True G68774
TU85949 lncRNA downstream 234630 7053931 ~ 7054306 (-) True G68773
TU85943 lncRNA downstream 243124 7044125 ~ 7045812 (-) True G68767
TU85931 lncRNA downstream 298069 6990603 ~ 6990867 (-) True G68757
TU86013 lncRNA upstream 50914 7340351 ~ 7340555 (-) True G68829
TU86069 lncRNA upstream 112715 7402152 ~ 7411890 (-) True AMCG00014276
TU86070 lncRNA upstream 124292 7413729 ~ 7416515 (-) True AMCG00014278
TU86077 lncRNA upstream 151063 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 166541 7455978 ~ 7459889 (-) True G68874
AMCG00014268 mRNA downstream 34580 7240284 ~ 7254356 (-) True AMCG00014268
AMCG00014265 mRNA downstream 195623 7077039 ~ 7093313 (-) True AMCG00014265
AMCG00014262 mRNA downstream 218212 7062062 ~ 7070724 (-) True AMCG00014262
AMCG00014264 mRNA downstream 226958 7061721 ~ 7061978 (-) True AMCG00014264
AMCG00014263 mRNA downstream 246220 7040731 ~ 7042716 (-) True AMCG00014263
AMCG00014269 mRNA upstream 58015 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014270 mRNA upstream 77957 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014271 mRNA upstream 90252 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014277 mRNA upstream 98181 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014276 mRNA upstream 112715 7402152 ~ 7411538 (-) False AMCG00014276
TU85055 other downstream 4459792 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4645029 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4746239 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5370754 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 5386321 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 88651 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 128161 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 847894 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 866792 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1093848 8383285 ~ 8384224 (-) True G69156

Expression Profile