RNA id: TU86015


Basic Information

Item Value
RNA id TU86015
length 1633
RNA type TUCP
GC content 0.48
exon number 2
gene id G68830
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7346195 ~ 7349467 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgaataaaaataactctTTATTAACATActaataaatacagaacaaaagtagccttttttaaggttttttgCAATGCCTGCTCTTTAAAGGGCTCCTCCTCACTGGCTTCCGCTCTCAAGTACGTAATCGAAACCATCATTGAGTTACGGATTTTGCACATTGAATTGCTTGGCTTTACAAACACTTATACGCACTCCTCTGGAACGCAGTAAACCTCAGCCTCACCGAGGAGGAGAGATGACTGCACAGGAGCCTCGGATGAATCCCTGGCAGGGACACAGCACTATCCTCTGTAATGGTCTTCatttcaatgcttttttttttccgctTCTCCTCCATGACACTGCCAACTAATTTTCATATACATGGTACACCACCGTGAGCCATAAAAGCAAGttcaaatgcagaaaaatacatatattaaattaaataaaatgcccaCACCtcacaaacattacattaatcatGATTTCAGATAGATTGACAGATATATTTTGACACTACAGCAGGTGGGCGTAGCGCGAGTCTTGCTCTGCCTCACGTGTGTCCCATTGTGGAGGACGCCAGGCGGTGTCAcgatataaatatacagacataAACATCCAAAACACTTCAGAATCAACCTATTTTATTACCTTTCTTgagttttttaaaacataaatatattctttCTGCATATGTAAAGTTAAGTAACAATCTGCAAGGTCTAATTTAGAAACGGAAGCCAATGTCCACAATGTCCAGGCCCTCCATCAGTCCCCAGTGTCCCCAGAGTCCCCAAGCTGGAGAGGAGTGTTGAGTGAACAGGTCCAAATTACAGATGCTCTTGCCCCCATCGGTCCTTTCACATTGGATCAGCCCAGGTGCCTTTAAAGAATAAATTAAGCTGCCCTTGAGTTACAGTCCAAACAGGCTCCAGTGTTTGAAGAGCAGTGTCCGGTTCCAGTCCTCAGCCTTGGGCCCAGTCCAGCGCTGGGACACTGGCGCACCGAGCAGGACAGTCCCGAGGTCAGTGTGCATGTCCAACACCGCAGAACAGacagagaatgtgtgtgtgtgtgtgtgtttgggtgggGGAGGCAGGATACATCCATGGGTCTGAAAGGCAGTGTGAGGCTCTCCCCCCTGATCTCTCAATCTCTGAAGAGCAAGAGAATCTCAGAATCGAGGAGAGGATTCAAGCACGGCAGCCGACTGCCTCCTAACGTCCCCCCCTGGGACTGGGAAACCCtgccacccccccaaccccagccCCCCGCGCTCTCTCTGGGAGTCCTAGATGGGGATGGAGACAATGGTGGGCAGCTTCCCGATCGGCGGGGGGTTGTACTTCTCCACTCTCATGAGCCGGCGCAGGATGTCGTCACGGTCCTTGGGCCAGCTATACACGTGTGTGTTCTGCAGCCAGGTGGGCACGTGGCACTTTTTTGGCCCCAGGGAACAGAATCGGGATGAAGCGGAAATTCTTGCTGCCGTTCTGGATGAACTCATTCTGCAGCTGCGGGGAGAAGGAAAGGAGACTCAGTGCGCTCCTCACTACAGAGACAGCCCCCAGCAATCACTTCACATTCATCAAAGCATTTTCTAGGACTTAAAACACTGCACAGAAATAACCCTCAAGGAGTAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85947 lncRNA upstream 287876 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 602084 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 631374 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1099146 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 1139619 6204178 ~ 6206576 (+) True G68686
TU86061 lncRNA downstream 119611 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 276521 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 525060 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 665277 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 783821 8133288 ~ 8136210 (+) True G69023
AMCG00014266 mRNA upstream 60960 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014267 mRNA upstream 108633 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 272593 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014260 mRNA upstream 291288 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014259 mRNA upstream 299320 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014273 mRNA downstream 95549 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014272 mRNA downstream 115036 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014274 mRNA downstream 134595 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014281 mRNA downstream 288354 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 295951 7645418 ~ 7653546 (+) True AMCG00014282
TU85565 other upstream 2694231 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2694231 4649200 ~ 4651964 (+) False G68475
TU84895 other upstream 4635866 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 4635866 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 4635866 2706840 ~ 2710329 (+) False AMCG00014146
TU86046 other downstream 64173 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 2653591 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6987391 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8326164 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8326164 15675631 ~ 15679788 (+) False AMCG00014490

Expression Profile