RNA id: TU86046


Basic Information

Item Value
RNA id TU86046
length 1510
RNA type TUCP
GC content 0.45
exon number 2
gene id G68848
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7413640 ~ 7416594 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacacacacacacacacacaatcacaaccTAGCAAGAACACACACAACCAGGTACATAAGAGCTTCCTTAAGAGTTTATTTAAgctcagtaaaacaaaacaaaaacactgtagtTTGATTCAAGTTTCCACACAATTGCACACTGTGAACAGAACCTCGGTCTCAACCCCCGTGCAGAGGGAATAAACACGGAAAGCACGGAGCAGAGAGATGGAGGCCAGGCTGGCGCCGCGCGGGTGATGGAGCGGGAAGAGACTTAGTAGGGACTTACTACTGGTTTACTTCACAGGATTCCCTTTGTACCccaattcaataataataataataataataataataataataatacctgaAATAAGTTAATTTACTTCCCTTTGGATCATTTCCTACTCCGCGTCTCGGAGGACAGTCTGGCTGCGAGACACCTGGGACTGAAACACACATTTCGcttcacacagagacaaagTCAAGACACACAGTTTGCAGTACCACTTTATCGCCAGACTGGGGCTGTACCTGGATTGTGTTTGacatgtttgtgtctctcttctGTTCAAACTCACCCCTGTCTATTGGCCAGTGCACAACTCAACATTATAAAAGTAGAATTCCACCGATTATAACTGGCAGAGATAACAAGatatgttttctgttaaataaatctCTACTTCTTGATCCTTAgctataaacattaaatatacagttcagaaaagaaaaaacaaagagaaaaatatatatattttcttatttaaaaaatcttccCTTTCGTTGTCACCATTTTCAAGCTTCgatttttctttctgtacagAATAATTCAAAGTAACggattcctttaaaaagaaaCGCTAGAGAACGCTGGATCTGCCCATGTCCACAGAGCCTTGATCATTCGGATCAAGCGTTTCGACTGGCGGCCGCTTCAACTGGGCCTTTGAGAGTGAAGGCAGGAGACGCCGTAGCCGTTCAGGTCCAGGACAGATCACTTCCACACTGCAGTGCAGAACCGTGTCCCAGCTGACGCACTTCATTCTGGCAGTGTTGTGTGAGGCTGTAGTTTGGTTATTTTTTGGTTGAGACACATATGAGGTGAGAATAATGCCGCAGTGATGTTACCCCCCCGAGCACACATCGCTGTGCAGTGCAATGTCATCTGTGCTTCAGATCCACTCTGCAGTACAGAcgctttctgtttgtttgtttgttttgttcattacaGTGCACGTCCTGTAGACCGACAGGGAGCCTCTATCTTGTGCTTCTGTGTGTGGTCTGTCAGAGCGGGAGGGCGGCTGTGCAGCGGGAGAGGCTTTAATAAGAGTAGGGACAGCTACTCTACCTTTACTGACTATACATACAGGGGGGATCCACAGCAAAAGGTCCCACTTGGCCAGCCCTCCTGGGGGGTACAGCACGAATCcgatctggagagagagagagtagggcACCGTCAGCAGCTCCACCACAACGCAGCTCCGCAAGAGCCCTCTtggcaaacacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85947 lncRNA upstream 355321 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 669529 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 698819 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1166591 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 1207064 6204178 ~ 6206576 (+) True G68686
TU86061 lncRNA downstream 52484 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 209394 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 457933 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 598150 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 716694 8133288 ~ 8136210 (+) True G69023
AMCG00014266 mRNA upstream 128405 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014267 mRNA upstream 176078 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 340038 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014260 mRNA upstream 358733 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014259 mRNA upstream 366765 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014273 mRNA downstream 28422 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014272 mRNA downstream 47909 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014274 mRNA downstream 67468 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014281 mRNA downstream 221227 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 228824 7645418 ~ 7653546 (+) True AMCG00014282
TU86015 other upstream 64173 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 2761676 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2761676 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 4703311 2706840 ~ 2710329 (+) False AMCG00014146
TU86705 other downstream 2586464 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6920264 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8259037 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8259037 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8712931 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile