RNA id: TU86077


Basic Information

Item Value
RNA id TU86077
length 673
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G68867
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7440500 ~ 7441172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttggcacatcccctgttctaagtgtctttcggaatatttgagttagcggcctataaataatttccctcatttctttaagtactgttgggaatatcccatctggcccaggtgatctgtttgtttttaattctgctagtccctttagtacctcctcctcatttatcctgatctctcttagggtttgactggactgattgtcaacctgtggcatgttatctgttttttcttttgtaaaaacctctgtgaaatactcattcagaacatttgccacatctcgttcgttttccaagatacttccatttttgccctttatctgtttcacttcctcctttattgacctcttgcttttgtagtattgaaaacaGCTCTTTGCATtcgttttttccctttttgctttcctgatccctttcttaagatctgtttgcagttcaacatattctttgtattttgtttagtctctatcccttttgtatgcgctatacaacattttctttctcttgatatttttttgcatacctctattaaaccattttggccaatgttttttggtcctcaatctgctaagttttggtacaaattgctcctgagcctcaattagtatattcttaaaatataaccatccattttcaactgaatctgatccagtgtgctccagcctaactcttctaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86070 lncRNA downstream 23985 7413729 ~ 7416515 (-) True AMCG00014278
TU86069 lncRNA downstream 28610 7402152 ~ 7411890 (-) True AMCG00014276
TU86013 lncRNA downstream 99945 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 151063 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 152165 7288063 ~ 7288335 (-) True G68826
TU86086 lncRNA upstream 14806 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 24237 7465409 ~ 7465662 (-) True G68875
TU86117 lncRNA upstream 184813 7625985 ~ 7626375 (-) True G68905
TU86202 lncRNA upstream 432981 7874153 ~ 7874358 (-) True G68981
TU86291 lncRNA upstream 693731 8134903 ~ 8136194 (-) True AMCG00014297
AMCG00014275 mRNA downstream 4394 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014279 mRNA downstream 14824 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014278 mRNA downstream 18786 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014276 mRNA downstream 28962 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014277 mRNA downstream 42731 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014280 mRNA upstream 128139 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014284 mRNA upstream 227381 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014287 mRNA upstream 289842 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014286 mRNA upstream 311734 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014291 mRNA upstream 579813 8020985 ~ 8060018 (-) True AMCG00014291
TU86071 other downstream 17209 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 59720 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4611356 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4796593 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4897803 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 696159 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 715057 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 942113 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1869279 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3355544 10796716 ~ 10798147 (-) True G69537

Expression Profile