RNA id: TU86086


Basic Information

Item Value
RNA id TU86086
length 3873
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G68874
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7455978 ~ 7459889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGTCttaacatggttttatttgGTGAATGTACATTGTTACAAtccatttacaaaaacaaaaacaaagtccaGATTCTTTTTTTCTCATGAATTCTTTTTTCAGTGCAATTGGTAGCAACAGCCAACAGTCCAACAAGAGGAATGACAGAAGAGCAGAGCATGCATTCTTCTCCAGAATCTCCACAACGTGATTTCCAGGGCAAAGGTTgactaaaatgaaataaacccACACCCCATTTGCCCCCAGCCGGAGGGCTCTCCATGCCACATGTGAAACGACCCCTTTGGTTTTTTCCCCAGAAACCACACTAGTAATCTGAGCACACACTGTAATCTGCTCCTAGCAGGTTTCATATCCTTGTAAACAAATCCCaattctgattaaaacaaaacaccttaAATATGATCTGCAGCCACAATTCCCCTCGTCCCAGATAGTGTCGAGTGCCCAGACATCCCAGAAACACCGGCTCGGCCATGAGGTGTGCTTGGGTCAAGGAAGCTCGTGGGTCACCGCTGTCATCCTGGCAGCCGTCCTCTTGCACACACAGTTACAGGTGGGCTGTGCAGACAACCGCAGTGTGGAGTGGCCGCTGTGGATGTCCAGCCCGGGGTGCCCGTCTCCAGTGTGGGAGCACCACGGCGAGGAAGGCGGGGGGGGGTTCCTCCTTTTCAAACTCTTAATTTCCAGAGCTAATAAGTGACTTCATTGTACCGCTATTACCCTTGTGCCCACTGGTATCGAATCCTGCACTGGGCCTAGCACAGTAGTGTCAAACCTCAATAGATGCCCATCCCTCAAAAGTTTTGGGACAGAAGCTCTCTGTGCAGCGCTGCACCCCAGAGCTCACTGATAGCTCACTGACTTCGAGATAGACGTCCTTGGGAGAGTTAGTTAGATTGGAAGGTGCCTCAGACAGAGCTCAGTGAGAGACTATAACATACACACCGCTGTCTAGAAAACCAGCAGTAAACAGGTCACACCCACCCCCCCGCCCACAGATGACCACACACTCACGCCAATCGTCACAGGAATGGATTCCACAAAAAAGTAGACAATTTCAAAACTGTATCGTGACCAACAGATTGGGGGGAACTTGGCAAATTAAGTTTCCATTGACAATTTGTGTGagaaatatttagtttgatcacaatacatttttgaaatggtATACTTTAACAATAACCATTTAACAACTTGAGCTGATCTCTAACAGACTCATCATTTTGACCTTTTCGATCCTTCAGCTCAGCATTGAAAGAAGCCTTAGAAATACAATCCTGCAAGTGCCAGCCCTTTATCTTTAGAGGCAACCAgtcattaatttgtttgtaacCCCTTTACAGTGCCCAGAGGTTATGTAGATGCTGTATTTACTTtccaaaaaagcattttaatgttaAGCACAAACTGATATGTAACAATGAAACTAACCCTCCTCAAATGGTATTGCCACTGCCAAAACACCACAAATTGCATCCAATCTGTTCCACGCCATAACGGCGCACAATGGCACGCTCGGGCACAAAACTAGTCTCTTTAATAGCCTCGTACAGCCTCTAGTCTCTGATCATCAGCTGCTGTTCCCCGTGCCTCAGTTAAGTCACCCGTCTCTTGTCCTGATTGGATCCCTGCACACTTTTTCAGTCCAAACCTTTCAAATACAGCTTAATATACAAACACTCCTGGAAATAATGGACTCATAACTTCAGCCCCTGGCTCtcacttccccactccaggcaggAGCCACACGCACGTCCACATTAACAGACTCGACTGCAGCCGCGTCTTATCGATGGAGGTGGCCAACTGCAGCCTGCAGAACAGACGTGGCAAAAGCCTGCACAGGCAGCAGTGGCACACAAGGCTGATCTTTACACACCTGCCCTCTGGAAAGGGCAGCTCGTCATACAATTGACAGGGAATTTTCAAGAGATGCAGGCAGCTGAatgagtaagtgtgtgtgtatgtatgcgtgtgtatgAGCAGTTAAAGCCCTCATCTGCAGGGCTAATGACATGACACTTCACACATCAAAAGAGCGTCTGAGATCACGCATACAACAAACTCCTCCTCTCTGCAGGTCCAACACTACCCTTTCAGTACAACTTTCCACTGCTCGACCGACAAACGCCACTCTGCACGGTCCGATGCCATCGTGCATCCGTCGTGGCCGACCGTCGTCTTCTCTGCTCTGCCTGCCCTGTCCCCGGGGTGGGCGTGTCTAGAATCGTCTGCAGAACGTGGCAGAAACTCATTACCCTATTCTCCTGCTTGCCAGTCGAAGCCCATGCCTCTGACTATTCCCCAAAGCTAcaatgcatataaaaaaaataaaaagcacattttaaaaataaactttaatggTTTCTTCTTCCCCCCCTTTTTGCAGTTTCCTCAGAACACAAACAATGGAGAAACAaccagaaaggaaataaaatgtcctAATCTTCTAGAACTGGACTGAGTCTCCGGGGTGAAGGCCAGCTCTGACCAacaaaatttataaaaaaaaaaaaaaaaaaaaaaaaagctggatGGTCGAACAGGGTTACAGCACTAgaattatattaacatttatttataaagaaaattcCACACATGCTGTAcagaatataaaaagaaaacctaaaataaagtaacaaaaaaataaactgtactgcctgtttttcattttaaagcccACTTTTCCCACGCGCGTTTCCCGAATCCAGGAGAACATTacacattaatacaattatcattcatattattttacttgtaaTTGACTAAAACAGTTTCCAGCTCTGTGGTGCCTCCACATCACTTCACAAGTAtcagagggtgtgtgtgtaggggggacGGTCAGACAGAACAGACCGGCAGGACATTCGAACAGACAGCTCATCTGCGTGTGAGTAGCTAATGAAGGCCCAGACCCGGCTAGCCGCGCACAGTACGTTGGACTGTAGAATCCGTGCATCGCCTCCGCCTCCTGGGGCAAAAGTACCTTGAGCACCTGACctattgccccccccccccccctcccagaTGAGCCAACACTGTGCGCGGAAACTATTTTTAGTATTGTTGTGGTCTTGTTTCACAGTAAGCAAGCAAGTGGTCATGGTCATTCTACAAATAAAACTAGCAGATTAAAAAGGGGGGTTTTGAGACAGGGGCGCCCGGACACTAATTTAGCGGCTTGTCTTTCTGTTATTGATCCGTGAATTAGTGTTTACATTCAAATGCAGAAAAGGCTCCTCCCgacgtgcgtgtgcgtgtttgtgtggaTGAACAGCACCGTTCGGGTTTTGTGACACTGTGGGGAGCGTTCACTCTATAGGAAGACAGGATATTGGGCGGCTCTACAAAGGCCCCCACTGGTATGGTGGAGCTCTCTGACACCGGGGGCAGGCTGGAGAGGGAAAGGGgtggaggggggcagggggtttCTGGGTCTTGGCTCTGTGTTTGGATGTGAGTCGGAGCTCCATAGGGCGGGATCTTAGGACAGCCCTCCCCATCACGTCTCCTGACTGTGGGGTTGTGTGTCATGTGACCTAACTGGGCCAGGGTTAGCCAGGGGGATTAGGCAGGGCTGGGAGATGGGGACAGGGAGTCGGGGGACACAGGTAAGAGGCTCAGCACTGAACTGTGAACGCGGACGTTGCCATAAGCCTCCTGAACACACACTCGCTCTCTGAACACACTCACACGGCAGAACCAACATCAACAAGACGCACGAGAATACAGAAACAGCTCATATGACTGTGTCCCCCCTCCCCTGTCTGCGTTCAACATCGTAttccacccaaaaaaaaaagaggagcaggttagtagtagtagatgtCAGGGCCAGGCTCAGTAGTGGAAGGGggccggggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86077 lncRNA downstream 14806 7440500 ~ 7441172 (-) True G68867
TU86070 lncRNA downstream 39463 7413729 ~ 7416515 (-) True AMCG00014278
TU86069 lncRNA downstream 44088 7402152 ~ 7411890 (-) True AMCG00014276
TU86013 lncRNA downstream 115423 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 166541 7288936 ~ 7289437 (-) True G68827
TU86087 lncRNA upstream 5520 7465409 ~ 7465662 (-) True G68875
TU86117 lncRNA upstream 166096 7625985 ~ 7626375 (-) True G68905
TU86202 lncRNA upstream 414264 7874153 ~ 7874358 (-) True G68981
TU86291 lncRNA upstream 675014 8134903 ~ 8136194 (-) True AMCG00014297
TU86331 lncRNA upstream 766605 8226494 ~ 8250561 (-) True G69086
AMCG00014275 mRNA downstream 19872 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014279 mRNA downstream 30302 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014278 mRNA downstream 34264 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014276 mRNA downstream 44440 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014277 mRNA downstream 58209 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014280 mRNA upstream 109422 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014284 mRNA upstream 208664 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014287 mRNA upstream 271125 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014286 mRNA upstream 293017 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014291 mRNA upstream 561096 8020985 ~ 8060018 (-) True AMCG00014291
TU86071 other downstream 32687 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 75198 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4626834 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4812071 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4913281 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 677442 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 696340 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 923396 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1850562 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3336827 10796716 ~ 10798147 (-) True G69537

Expression Profile