RNA id: TU86117


Basic Information

Item Value
RNA id TU86117
length 391
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G68905
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7625985 ~ 7626375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaacaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattctctatgggattaaggtctggag

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86087 lncRNA downstream 160323 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 166096 7455978 ~ 7459889 (-) True G68874
TU86077 lncRNA downstream 184813 7440500 ~ 7441172 (-) True G68867
TU86070 lncRNA downstream 209470 7413729 ~ 7416515 (-) True AMCG00014278
TU86069 lncRNA downstream 214095 7402152 ~ 7411890 (-) True AMCG00014276
TU86202 lncRNA upstream 247778 7874153 ~ 7874358 (-) True G68981
TU86291 lncRNA upstream 508528 8134903 ~ 8136194 (-) True AMCG00014297
TU86331 lncRNA upstream 600119 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 1264181 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 1372051 8998426 ~ 8998626 (-) True G69250
AMCG00014280 mRNA downstream 45885 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014275 mRNA downstream 189879 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014279 mRNA downstream 200309 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014278 mRNA downstream 204271 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014276 mRNA downstream 214447 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014284 mRNA upstream 42178 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014287 mRNA upstream 104639 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014286 mRNA upstream 126531 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014291 mRNA upstream 394610 8020985 ~ 8060018 (-) True AMCG00014291
AMCG00014297 mRNA upstream 508847 8135222 ~ 8138788 (-) False AMCG00014297
TU86071 other downstream 202694 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 245205 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4796841 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4982078 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 5083288 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 510956 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 529854 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 756910 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1684076 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3170341 10796716 ~ 10798147 (-) True G69537

Expression Profile