RNA id: TU86331


Basic Information

Item Value
RNA id TU86331
length 3971
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G69086
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8226494 ~ 8250561 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGGCTCACATACATGACAATCCCCGTTACACAAGCCCTCACCAAACCTCTGTTCACATTCTAGTGCTCTACAGTAGCCGCAATGTTGGCTAAGGGTGACAGCACCAACCCCCAGCCGACCGGGCCTTTCAAACGATCATGAGGATAAGACACAGGAAAACCGCATGAAGAAGGCTGATGTAGGAAACCtttgtacagtaaaaaaaataccagCCTGCAGGACAGATTTTATTGACAGATATCACATGCAGAACATCTCAAATGAAACAGTTGCAAGGTTTTTCTAGGGGTCTGAATGAGAGTCAGGCAGGAGGAGGGATGTCCCCGGAGGACGTACATTACACGAAGAAGCGGCCGTGGACACGCAGCACGGAGAAGTGCGATTCCGCCGATTGGTCACTGGTGGGCAAGCGTCCCACCTCGATGTCGCACGGCCAGTCAAACAGCAGAGAAAATCTAAAGGCTGCTACATTCATGATTGCACAATCTCCAGTCATACTTCCAGGCTGAAAGGGGCGTCAACTCGACCCACAATCCATATCAAAAGAGACGTTTGTAGAATAGAAAGAATGGTCAGATTTCCTCAAGATTTCGATGAAAAAAGAAGCGGCTCAGTGTCTTCCCGAAAACAAACAACTTtacaaaaagacaaatgcacagatTACCACCCCACTTCCCTTTGCAGTAACTGGAAACAGAATTTACACACATCATTTGTTGGCTATATTTCTCCTCCGATTCAAAAACAGAGAAGACCACAAGAGTTTGGAAACACAGAAAGGCTGTACCGCAGGGCAACAAAGTGAAGCCGAATATTTCCAGTAAAAGACAGTGGCTGTGCTTCCATGAAGTGTATAGTCAGTCACAGATGGGTCTTTGAGACgcatttcaataattaattagaaGGTCTATAGAGTGGGCTCCAAAGAAAATATGGGATCCAGATAAAGCATGTTTTAGGAAGGATGGCATTAATCATTTAGGGAGATGTACGATTACGTTACATtacaatattgaattatttagcaTAAATACACTCTCAGACCAAGACCCTTTTGAAATGTCATGTCTAGCTTTCGATCCCAAATGATTTTTAGTAATCCACGTGGCCAGAACCCACTCGGATCCAAACTCCTGTACAGGCTTATTATACAAGTATATCACTTCAAGAATGTATTGTGATCCAACTATACATTCCTGATCTACAAATAGTTGCCAGGCTGTAACATCTTTGCGAGTTACAGTTTCCATTGATGATTATTTGTGCATCGGGAATATGTAGTTTGATCACAGTACGTGTGTGAAATGCTGTACTGCTTTCAGAATAACCCTGTAATTTTAGAGTAATACACACTAAACGCTCCTTTCTGCGAAAGACTTTAAGATCAAGGTCCTcaacaaatcacatttaaaaagcagaaatttAAAGCTGGGGTCCCCAGTCTTGGAGGGCAGCCATGATTTTATATCCACCTGAGCCCCTTAGTACCCAATTCAACTGTTTATTGCCTTTCCAGAACCAAAGCAACCTCTCTTAGCAGCTCTGATAGAGATCTGAATGCCTGCTGGACCAGGACTGGGGACCCCAGACACAATCCAACACACATCCCACTCATTCGCAAGCTTGAGTTTCAGATATCAATGATGACAGTATTTGGAGCCCACTGTATACATGTCACATTTACACTTatataacaacacaaacaaacagtacaCACTTCACTTCCTAGTAATAATTACTCGAGACGcatttaaacaatgtgattACTTCATTTGTTATTCACGATTAAATTCAGAACCCACTCGGGATTCTCTGCAATTAGTAAGCAATGCATTTTCAACCAGACAGGACAGCCTTTTGTTCGTCGGCATAATGACTGCAGCTCAACCGCAGTTAAAGTGCTTCAGACTTTATCTCCTGCAGAGAACATTTTCACTAACCCGCTGCAGTGCTACGAGTTGCACTGCAGCTCCAAGATGCAACTAAAGACTTTAAACTGAGTGACAGCTTTACAACTGTGGGAAAACATTATTGCGCAAAATTAGCAGAAGTAGAAAAATTCAGTCAATTTGGACATTTGGCCTTATACCCTCTGCCGAATGGGAAGTCACAGTATCCTTTCACAGAGACCATCAGAAAATGGCTCGACACCGAAccagaaacacacagcagtCGAGTCACACAGATTTAACTACAGTGAAgcatttcaattacattattattttttggacGTTTCAAGAACTGATATCTTTCTCAACTAAAGTAACACTATGCTGCCGATACAGCACATCTAATGGCTTCCTGCAGCCTCCCCTCTGGCCTGTTAGTCAACACAGTGCTGTCCACTGAACCTTCATTGCAACCCAGTACATTATTCCAACCAACAGCTTTCGTATTGCTTCACTTGGTCTTGTTGGGAGAAGTGACCAACTAAAGTGCAGCCCACTTTTCTCTGGGACCCTCTGTGTATAGCTAGTCTCAGGTGTATGGCAGACATTGGCGAGTCTTGGCACCAGTGGGTATGGTTTCAATACAAAATGCCGAACAAGGTAGGAAGGGCGCAGACACAGTCTCTCAGTGCTGCAATGGACAGCACATTTACATCAGGTTAATGAGAATGAAGTGTGAATACGATACTAAACCGCTGAAGTGGTCGGTAATAGCTGGCTAAGTGTGCGGGATGGACTAAAAATTAGTAATAAATTTATAAAAATGGATCCATCCGAGGTGTAGGAGCATTGCTCCGGTCCCAGAAATAATGCATTGAAATGGCAATTCAACTCCAGTCGCTTCACACAGTGGTGAATAAGAGAGTGGAGATGTAGAAGTATTACATATTGTATTCATCTGTTCCCATTAGCAAGCCTACATGATCGCCTAAAATCGCCTAAAATGCATCCCGTCCCCCTTTCGTCATCTCATGGCTACTCACAATAAAGCACTGCCACTTTAGTGATGCTCAAGAAGGCCCACGTTGAAATTATGCTCTGACACAGAAGTGGATTGTATAGCGAGACCAATCAGAGCTGCTTCTGTTTCAACTTTCCTCGAACCTAGAGCAGAAGCATTAAGCTCCACGAGATGTAATCTGTGATCCTTAAAAACATGTAACCCACGATTAATGGACATCGTTGACTCTAGAACAGTCTATATGTGTATGTGATGCTTTGATAGCCACTGCacttgtaaaacaaaacaaagagggTGGTTTACATTAAAATCATTTAGTTTCATGCTTACTGGGGTCTTCTGGTGGGCTAGCGGGGATGAACTATGGCTCACACGTTAGCAGAGGCCTGGCGACCTTTTGGCCCATCTTCCAGGGCTGAGTCTCTTAGCAGCAATGTGACTCGATTAGGACAGTTGATTGGCTTCACAGACCTACCCCTGGCTCAGGCATTTAAAGCGCCCGACTGACGACCTTTGTCTTAGGATGGAAAGTGATCAATTCTAGCTTGGTTAAGCTCCTCCCCTTTCGATTCTAGGACCACCTCTCAAAAGAGGTACAGCAATCGTGTGCTGAACTCATTTCCCAGGAGGTTGTAAAGTTTTCAAATACATCCTCTGGgaaagtttcctttttttttttttttttccctctcctttCCCTCGctcaagcatttaaaaaaaaaaaaagacgacatacaaataataaaaataacatctatACTGCATACAGCACATGATCTCATCGTGAATAAAGGTTGCCGACACGAGCAAAGCCGCATTTCCTCCAGTCCGTACTTGATGAGAATGAAATGCcgcagaattgtttttttttttttttctgtcccttGCTCCTTAAAGAGCTACGATTGGATGATCAGCTATGGCCGGCCTACATGGCCCGAGTTTCTCCAGGGGCAAGAAGGGTCTCAATCCAGAAGATGTGGTTCTGGAAGGTGAACAGAGCCAGACCCATGTAGGAGAAGATGAAGTTTTCAGCCAGGAAGTGCAGAACCTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86291 lncRNA downstream 90300 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 352136 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 600119 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 760832 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 766605 7455978 ~ 7459889 (-) True G68874
TU86493 lncRNA upstream 639995 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 747865 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1099227 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1339263 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 1340615 9591176 ~ 9591381 (-) True G69373
AMCG00014301 mRNA downstream 28869 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014300 mRNA downstream 40254 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014298 mRNA downstream 68006 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014295 mRNA downstream 71091 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014296 mRNA downstream 79486 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014302 mRNA upstream 9166 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014303 mRNA upstream 53970 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014305 mRNA upstream 71873 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014304 mRNA upstream 79495 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014312 mRNA upstream 286376 8536937 ~ 8539049 (-) True AMCG00014312
TU86302 other downstream 67904 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 87368 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 803203 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 845714 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5397350 2825562 ~ 2829144 (-) True G68088
TU86412 other upstream 132724 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1059890 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2546155 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3409460 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 20079178 28329739 ~ 28332482 (-) True G72236

Expression Profile