RNA id: TU86493


Basic Information

Item Value
RNA id TU86493
length 284
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G69233
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8890556 ~ 8890839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcatgggcggccaaggctcattgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagatgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcatatggggctgcgtagctgcagaccagtcagggcgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccatggagcaatggaagaaggtggcc

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 639995 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 754362 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 1016198 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 1264181 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 1424894 7465409 ~ 7465662 (-) True G68875
TU86513 lncRNA upstream 107587 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 458949 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 698985 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 700337 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 1003887 9894726 ~ 9895580 (-) True G69382
AMCG00014311 mRNA downstream 132375 8731578 ~ 8758181 (-) True AMCG00014311
AMCG00014310 mRNA downstream 275555 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014312 mRNA downstream 351507 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014304 mRNA downstream 556104 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014305 mRNA downstream 564136 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014317 mRNA upstream 139266 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014319 mRNA upstream 156465 9047304 ~ 9050642 (-) True AMCG00014319
AMCG00014320 mRNA upstream 170194 9061033 ~ 9085213 (-) True AMCG00014320
AMCG00014318 mRNA upstream 240576 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014326 mRNA upstream 253699 9144538 ~ 9147337 (-) True AMCG00014326
TU86412 other downstream 506332 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 731966 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 751430 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1467265 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1509776 7378088 ~ 7380780 (-) True AMCG00014271
TU86630 other upstream 419612 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 1905877 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2769182 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19438900 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20498451 29389290 ~ 29398305 (-) True G72477

Expression Profile