RNA id: TU86641


Basic Information

Item Value
RNA id TU86641
length 4982
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G69352
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9349788 ~ 9355238 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGGTCAAAGGGGTGGGGCTGAAGGCAGTTCACCACATGATTGTCAGCCTCCAGCAGCATCAGATGCTCAGCTGTGTGCCGATCCCAGATAAAGATGTGCCCACAGTCAGAGCCACTCATCACAAAGTTATTCCCCCAGAAACTGGAGTTGCGATGGCCTTTGTAGACCATCTTGACGGTGGGCTTCCTGATGTTCTGGGTCTCGCTCTCCTCCATCTCGCgcctctccttcctcctcctgaAGAGCTCCTGGATGCGGGCAGCAGCGGAGCGCCTGCGGGGAAGAAGCGGCAGCTGTTATCCTTCCCAAACCGACCACGCgtcaccctctctccctcaagCCGAGACGCTTCTTCTGAAGGCGGTGGGTAAAGGGGCGGACTGTACGAGTTTGCTCAGGTGACACCGAAAACAGCCACAGTTTTCACTTGTCAATTCTACATCTGTAAGTTACAGATCCCCGATCAGAGGTTAATGATATTATCATGAACTTCAGTGTGTCCAGTGAAACATTATAGTAAATCATGGATTCGTGGTTCAGTTTTAAGATGTGTAATagttatatttgtgtattttggaaGGAAAATTCTGAGAAGTATGATTCATTTCTGTAGCTGATGTTTATATGACTGAAGCTTCAGCTGTTTTGAATTCTATTTCAATTACTTGTAGAGAGATCGAAAATAGCACTTCCATTTttgttctggttctggttctctTAAACAGGGGAGGCAGTGCTCTTGGTGACCAAACTCTGAGGAACAAAATAGGCTGGCCATCTGAACTGCAAGTGCCTTTAATTTGAGAAACATCAAGCTTATTATTACACATTGTGAGTAAGAGCTTGATCACCGTTTGATTCTATTTTAGACGGATACCggtccttctttttttttttaaactgtgtataaGGTATGCATACCTTTATCATACAAACCAtttggattattttaataaaaggttaGCAAATTTATACTCCCAAAAGCTATAGTAAACAAGCATGAAACTGCTTTATTTATCTGATGTGTTTAATTACAGATTAATCCTTCTGAATTACACATAATTTATGACCCAGACTGCTCTCACAAATGCTGTGACTGCCCCTGCAGTATGCTGGTTTGATGAAATCATCTAATCAAAAGTCTAGGGCCCGGAGGAATCTGCAGTCCGGCCCAAACTAGTTTGAAGCAGATGCTTAAATTGCATTGATCTAAACAgacacaataatttaattttacctAGAATACATGGCCTGGGTATAATTTCATGATTTAGGACCTCAATTAATTCTTATATACATATTCTTatattgttgtcattgttttctcCAAAATTTACAAAGCTGTTTTAATGAGCTATTCAACTGTATGGGATCGAGTTGTGCTGACATTTTATTAGCAACTGATTCAAGTCCTACAGGTGGTACACTTTGAAGGAAATATATCTACGATACACTTGCAAGCCCAGGCAATATGGTGCTGTGCCAACAGGATTTAAAAGTATTGGAGAACAGAAGGCTGAGTGTAAGAGTCACGTGACCCTACTTTAGCCTAAAGCTGAAGAAGCTGACGGCATGCCCTTGGGCACgcaatttaaatgtgttgctgTCCTTATCAACCTAGCAGACCTGTCATTGCTGCTTACCTACTTTGTATGCTTTTATTGGTGCATGAATCGGGAGAAAAACTGCAAACCCCAGCCTcctttgcagtttgttttgaatggtAGTGCATTAAActaatacatgcacacatgcagtgGCACACAAACAGTGTCTTTTCACACCACACACTCTACAGGTTAGTTTTACATTGCAGCTCTAGTGAGACACATTGATGCATAGCAAATAGATCAAATTAACCCTGgaggtttatttttctatttttgtaatatttaaaaagttaaaagaatCATTCTAAGCAGATCAACATCACTTTAGtaagaaagaaatatattaaattacctTATCATTCTATCACCTACTGCTGATCCTCTGAAATTAAATCTATTGGAGGGAACACAATATTTACAAACTTTACTTAGGAAACTAACTACAGAAAGTAATCTGTTTTCAGAACAGAACaatgcacatatatatttacaaactgTACAGTCACTTTTGGCTACAACAGctaatgataaaatataatgaatatatgtgCATAAAAGTAAGTAAGGAATGTAAGGATCTCGGTCATCCACCTCTATATGAACAATTACATCATACACTCAAACATCTCTCCAAAGAGTAAGACATGTCTTATTTAGAAATTGATTACGATCCCACCAAGGGCAAATCATTTAGACACAAATCTGTAAAACACTTTCAGGATGAAGCAATTTTCTGTTGTGCATCAAAGGTTAGGCATCAAAAGTTAGGCTTTGAGCCACGTTTCAGGTTACACATTGTTTAGCTTGATTTCTCACGGCCTTACACGAGTAATATATCCTCATACATATCGCTTTCATTTCTTGCTGGTCAAACACCATAGTGTTTATGATTGGATTGATTCTCTGATATTCGTTCTGCTCAGGGCGTTACTTGCCATGGCTAAAGAAGTGCAGAAATTGATCAATTCTGCCCTTTGCTAGAATGGCAAATAATAAAAGCAGCTAATACAACAAGATAATTGTGCAGAAGACACACAGCTTGCAACAAGAAAGATGCTATAATGTGAAAAGGCAGGTGATATAAACTAATATATTCAGATGAGAATATTGGATATTGGATATTCACACTGGtatgttttctctttcactaAAGCAATGCCACATGTCTCATGTACAACAGTAACAAGCTGTCCAAATGCGATTAGATTTCCAACGTGAACTGGTCATATTGGAAACTCTGTTTTGTTGAGCATTAAGGGAACAACAgccattgatttttaaaaagcacatctaTGACAAATTAGTTTCCTTGTTCTTGTGCTTTTCCATTGGTCTTCGCCTTTGAAGTCTGCTGCATAAGGAGTGAAACTGACcttcagtttttaaaaggttttgtctgtgtaaacaagagGCACATTCATCAGCCCCAGCACTGGTGTCAGTGCTGTACCTCATTTTTTTGAAAAGCCAATGAAACGTATAATAAGCAGAGACACTGCTGCAGccaatcataataacaataaatgatCATCATAAATGaaacttaatttgtttcagaaaaataaCCTAGTTGCTACCCATGCTGAATACATCAAGCTTGAGTTGACCCATCACATTAAGACTGCATCGCCAGGTCAGGTCAAGAAAGGTAGCCTTCACACAACGCGCCCAGGCTGCTCAACATGCCACTGAACGCAGGATACATTAGCACATTCAGGGATTGGCAGGCTGTGCTTGAGACTGCTCTCAGAAAGCATAGGACACTTCAGATCTGCTAGGCTTCTACTGTAACTCTCAGCTCCAGCACTTACATCAAACTTATGTGGGCCTCTATAGGGAAATCCCCATCCTGAAGATTTGCACAGTCCCTATGAGGGCcaagagcactttaattcagaaGTTTGCTGACAGGGCAACAACAAGCAAAGGCCAGAAGCCCTACCAATTGAGAAGATGTGTTTAGATGCTTATTTTCCCTTTATAATCCATTACGTCAAGGAcacataaatgtaattgtattgacATGATACTTTATCACACATACATAGTAGAGAGGCCTAATTAACCATTTCATTCCATGGTCTAAAAGACATTTAACTGAAGTTAATAATAAAGAGCAACCTCCTAAAAACTTAAATCATTTGAGAATTTTCTAGTCAAGCTTGTAGGATAGAGTTAAGCGTTTGTTCCCTCTGCTCACGAGTCCCTTGGGTACACTAAGAGAAGCCAACCACACTTAATTCTCCCCACTTAGAACAACATACAGTATCTACAAAGGTCAAGGTGGTACGCAACCAAATTATGTAAAGCAGGGCAGTCGAGACATGAACAAGCATGTCCCTTTCACTCTTCCTTCAAAGGACTTATTGTACACATCTCAAAATCTGGTTGGCAAGAAAATGTCATCAGGGACCTAATTCAAACACGGAGAAAACTGGGAAGGCAGCCGTGAGGAAGAACAGCTTCTCTGACTGGGTGgaacaaagcagaaaaacattttcctctGGAGTTTTTATTTAGTACTTGGTTAAATGCCTAGCCCTGCTCAGTAGACTGCTTTTAATTAAGCTTCCTTTGTTCGTTTATTCATTGCATGTGTCAATATAATGTGAATCcgaatgtttattttaatagacttttaaaaactgaggaggaagaaacacagaaacatacaaTGCATCCATATCACGGTTTGCATAGACACACCCGTTAATGTCTGAACACAACTACAGCCAGAAAACTAAAAGTTGTGAAGCAATATATTATTGATGACACTGTAGTATATCATCTATAAAGCTGACTAACTAAATCAAAAGCAACATGTTTTGCATATTCAACAATCATAAGGTGTTCAAACTTCCCTCCACAACAGCAGCTCTCACGAACTTACTATTGCACTCGGGACACAAACATCTCAAGTAAGAGCCCTTCAAAATACTCCAACAGAGGAGCGTGGTTTGCAGTACTTGCTGCGAGAACATAGTGCGTAACATACCTCTGCCCCTGTCCTGCACGATACCTTGCTGAAGGTATTAAAATGGGGTCGTCGTCGCTGTCATCCGAGTCCTGGTAGCTGCGCGAGGGCTGCTCCCCGCTGCTTTCTCCCGCCGGTTCGGTTCGCCGGCACGACTGGCTGGGGTTTTCCACAGCCGCCCCCTGCTGCGCCTCCAGCGCTGGGGAAGAGGCGCTCTCTCCAGCCGGGAGTGGTTCTGCGGGGGGCTCGGTCACAGGACTGTCCCGAGTGCTGGAGGAGGCCTTTTCTGTGCTGCGGTCGCCAGCCTGCTCCACACTGCCAGTTTCCTGTGGCTCGGGCTGTACGGCCAGCGCAGACGCTGAGATCAGACAGAGGACAATGCATTTTAGTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86513 lncRNA downstream 351162 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 458949 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 1099227 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 1213594 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 1475430 7874153 ~ 7874358 (-) True G68981
TU86667 lncRNA upstream 234586 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 235938 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 539488 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 546119 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA upstream 546119 9901357 ~ 9912021 (-) False G69391
AMCG00014328 mRNA downstream 32882 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 121161 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014326 mRNA downstream 202451 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014318 mRNA downstream 214401 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014320 mRNA downstream 264575 9061033 ~ 9085213 (-) True AMCG00014320
AMCG00014331 mRNA upstream 3609 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014333 mRNA upstream 18218 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014332 mRNA upstream 112086 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014340 mRNA upstream 645896 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 672414 10027652 ~ 10043566 (-) True AMCG00014341
TU86630 other downstream 32621 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 965564 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1191198 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1210662 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1926497 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 1441478 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2304783 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18974501 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20034052 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22907929 32263167 ~ 32263427 (-) True G73047

Expression Profile