RNA id: TU86677


Basic Information

Item Value
RNA id TU86677
length 855
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G69382
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9894726 ~ 9895580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATATCAACATCTGTCTGTTGTTTAGCCTGGTGTCCACTGCATATCCCATTGTCTCCTACCAACAGATGCTGTATATTTATTCTTGTGCACAGTATGCTAGTGCTTCAGTGTTAATGTTAGCATTACAGGTGCATTTTTCAAACCTCAGTGACATTTGATAGTGCACACATAGTGTAGTATGTATTGCACTATATTTAACACCACAAAATGTTATCCTGTTATGGAAGGACTAAGAatccatttaaatataataaaatattgttttttatataacgGAGGTTACTGGTTTTAGGATTATGAGACATTAATAATggtattcataaaataaatgacttttcTCCTGAATCTGATATGCAACACCAtgacatttacaattaaaatgagaaCAATCTGAGGAAcatgtatatagtttttattgCCAAAAGTAATGTGACATGACCCGGTGGTAATGGATGGCGTTGGAGGTCATGTTTTATGTACAGGTTTTCTGTATTTGCACCACTACATACTGTAATATTATAAACAACAGGGTCCTACCAGCACTCATGGGATTTTTAGCTGAGGACCCATATCTAAAAACACAGTAATGCCATGTCACAAAGCTGGGGGTTTAACACAGTGGATCATTGCCTTCTCAGTGTCCTGACTTCAATCACTTGAACACTTTGGGACTGAATTGAAACAGCAAATCAGGAAGAGATTACAGAGACCAACATCATGTGTTACAGATACCCAACAATATGTCATGTGTGATTACAACTGTaacttgtattttcttttgagaaGGTCAATACATGTAATATGAATCAAGTTCATGTTCTTTCTTGCTGCCTACACTGTATTTCAGTAATTG

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86668 lncRNA downstream 303345 9591176 ~ 9591381 (-) True G69373
TU86667 lncRNA downstream 304645 9589824 ~ 9590081 (-) True G69372
TU86641 lncRNA downstream 539488 9349788 ~ 9355238 (-) True G69352
TU86513 lncRNA downstream 896100 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 1003887 8890556 ~ 8890839 (-) True G69233
TU86687 lncRNA upstream 5777 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA upstream 5777 9901357 ~ 9912021 (-) False G69391
TU86691 lncRNA upstream 21265 9916845 ~ 9917335 (-) True G69394
TU86693 lncRNA upstream 39595 9935175 ~ 9935398 (-) True G69396
TU86723 lncRNA upstream 119910 10015490 ~ 10017751 (-) False AMCG00014340
AMCG00014332 mRNA downstream 422467 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014333 mRNA downstream 476490 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014331 mRNA downstream 527690 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014328 mRNA downstream 577820 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 666099 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014340 mRNA upstream 105554 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 132072 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014339 mRNA upstream 162688 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014346 mRNA upstream 297049 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014348 mRNA upstream 345426 10241006 ~ 10256375 (-) True AMCG00014348
TU86630 other downstream 577559 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1510502 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1736136 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1755600 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2471435 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 901136 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 1764441 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18434159 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19493710 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22367587 32263167 ~ 32263427 (-) True G73047

Expression Profile