RNA id: TU86679



Basic Information


Item Value
RNA id TU86679
length 727
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G69384
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9901450 ~ 9910048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCAACttatcttttatttatacagttgttacagtgtatttaaggtggatgtacatttgttttacaacaGGCTACACATTATTTAGAATGAATCTGTTCTCTTTTCCTTAATACTGGACTGCAAAAATTCAAGTCAAAGCAGACTATGCCTTTGAAATATCTTTAATTTCCTGCTTTCTACCTGCACAGCTCAAATCTCGCTCACAAAGAACAAGATTTGGTAATAAAAGACAACAGCAAATCCAGAAGCCATTCGCATAATGAACTGTTACtatgagaaacaaaaatacaaaatggactacttttttcattttaacaactGAATTTGCATATCTTTATAGTCTACCCAAGAAAACAGCCTGCAGCATCAATACTCAAGCAGTAATGCACTTTTCTCCTCAGAAACACAGAAGAAGGATAAGCTGTGTGTTGTGTCCATTCTCCTTCTGCTGCAATacctcattttaaaatatgcttcTGGGATTGTGGGGAGCTGTGTACGGGCTATTCCTGTAAGGGAAGAAATAGAATTTAATCTACAAGCAATGCACCTTTaccaaaaatacaaacttaCTGGATCCACGATACTCTCCTTTGAATTCACTCCACCATTTTGTCACATTACCTCCACTGGAATGTAAAGCCAAGTTGCGGGCACGAGTCAGCGCGCCCCCTGCTGGTCTATAAATGttcccttttcttcttctttttttttgtttttttttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86614 lncRNA upstream 525100 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 1010616 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1165511 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1765240 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1886447 8014744 ~ 8015003 (+) True G69006
TU86698 lncRNA downstream 64376 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 144443 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 145329 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 237931 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 313623 10223671 ~ 10224035 (+) True G69457
AMCG00014336 mRNA upstream 92570 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014330 mRNA upstream 419395 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014329 mRNA upstream 443363 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014327 mRNA upstream 540274 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014324 mRNA upstream 628395 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014334 mRNA downstream 4077 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014335 mRNA downstream 49185 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014338 mRNA downstream 83625 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014343 mRNA downstream 105455 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014342 mRNA downstream 215106 10125154 ~ 10145702 (+) True AMCG00014342
TU86046 other upstream 2484856 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2551983 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5249486 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5249486 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 7191121 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 93010 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4426810 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5765583 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5765583 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6219477 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile