RNA id: TU86688


Basic Information

Item Value
RNA id TU86688
length 1258
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G69391
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9901357 ~ 9912021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttgaattgAAGAtccaacacacatttattgaatACAAAGCCCGTGGATATCCAGGTGCAGACGCTTGAACAGTCAGTGCCAGGAGCCCACGTCTTGGATCAGGCTCGTGCTTCTGTTTACATTGCGCGGGCGGCGTCATTAACTCAGCGCGGATGCGGCGGAATGACCGGCGCGCGTTTCACACGCCGCGTCCAAAGGGCGTCTCATGTGGCCGCGCCGCGCCGCGCGGAGAGCCGTGCAGGAGTCACTCTTCTGCAAacacttaaaagaaaaacaaaacacgaaaCAGAAAAATGTTCACGTTTTCAAGTTTTgccctttttttgttgttgtttggttaTGTTTTTGTCCCCCTATTCCCTGCTGTGGAGTTCATTAGTTTGtGAAAATAATAGACGAGCGGAGGAGAGCGGTGCTCAGTCGAGTCAGTGCAAAGGAAAATCTTAGGAAGGATCCTATCGTGGCACAGGAGAGAAATCCCTACATTCATTTCATCAAAATATCAATCACAAGCTTGATTTTTCTGTGTATTCCTGGATTTACACCTGTGGAACAGATGCCACATAGAGCTGCTCCCTGAAGATCATTTGTTTCCTTGATGGGGCATTTCTGAGCCGGCGTTCCGGTTGCCATGGCTTTACATTCCAGTGGAGGAATAGCCCGTACACAGCTCCCCACAATCCCAgaagcatattttaaaatgaggtATTGCAGCAGAAGGAGAATGGACACAACACACAGCTTATCCTTCTTCTGTGTTTCTGAGGAGAAAAGTGCATTACTGCTTGAGTATTGATGCTGCAGGCTGTTTTCTTGGGTAGACTATAAAGATATGCAAATTCagttgttaaaatgaaaaaagtagtccattttgtatttttgtttctcataGTAACAGTTCATTATGCGAATGGCTTCTGGATTTGCTGTTGTCTTTTATTACCAAATCTTGTTCTTTGTGAGCGAGATTTGAGCTGTGCAGGTAGAAAGCAGGAAATTAAAGATATTTCAAAGGCATAGTCTGCTTTGACTTGAATTTTTGCAGTCCAGTATTAAGGAAAAGAGAACAGATTCATTCTAAATAATGTGTAGCCtgttgtaaaacaaatgtacatccaccttaaatacactgtaacaactgtataaataaaagataaGTTGAAGCTTGCAGTTGTAAACTCTCCATATTCCATTTCCCACTTTTTGTGATAGTTATGGACAACTCCACATACTGATCTTTCTAAGAATACATTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86677 lncRNA downstream 5777 9894726 ~ 9895580 (-) True G69382
TU86668 lncRNA downstream 309976 9591176 ~ 9591381 (-) True G69373
TU86667 lncRNA downstream 311276 9589824 ~ 9590081 (-) True G69372
TU86641 lncRNA downstream 546119 9349788 ~ 9355238 (-) True G69352
TU86513 lncRNA downstream 902731 8998426 ~ 8998626 (-) True G69250
TU86691 lncRNA upstream 4824 9916845 ~ 9917335 (-) True G69394
TU86693 lncRNA upstream 23154 9935175 ~ 9935398 (-) True G69396
TU86723 lncRNA upstream 103469 10015490 ~ 10017751 (-) False AMCG00014340
TU86727 lncRNA upstream 141716 10053737 ~ 10054275 (-) True G69427
TU86735 lncRNA upstream 146076 10058097 ~ 10061092 (-) False AMCG00014339
AMCG00014332 mRNA downstream 429098 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014333 mRNA downstream 483121 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014331 mRNA downstream 534321 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014328 mRNA downstream 584451 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 672730 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014340 mRNA upstream 89113 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 115631 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014339 mRNA upstream 146247 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014346 mRNA upstream 280608 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014348 mRNA upstream 328985 10241006 ~ 10256375 (-) True AMCG00014348
TU86630 other downstream 584190 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1517133 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1742767 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1762231 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2478066 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 884695 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 1748000 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18417718 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19477269 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22351146 32263167 ~ 32263427 (-) True G73047

Expression Profile