RNA id: TU86705


Basic Information

Item Value
RNA id TU86705
length 1553
RNA type TUCP
GC content 0.39
exon number 2
gene id G69406
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10003058 ~ 10008648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGTCATAGTGACATAACATGGATACTATGGTGGCCTATGAGGGGAAGCCATGTCACATGACTTGAGAGGATTCTACAAACTCTGCCAAATGCTTcttcaaaacaaatcataaatatcaatttatttattttgtaattatttttgagaagaccatttctgtttttgtgacaTACTCAGgaaaatattcataaaattgAAAATCTGCATTCTAACCactcaaaaaactaaaaactaaaataatgagaCTGTGTTGAGATTAGAAGCCCTTACCTAGCAGCAGCTGCACTCTACAGATACTGGACTGCCGCAGCAGGTTTTGCAGCTTGGCCCTGGCACAGGTTAAATCCTCTGCAGGCGTGGCGCTCTGAGACTGTAGCTGCAGTACGCTATCGAGGTAGAGCACTGCCAGCCATGGAGCACTATCCAGAAGGAGACACGAATTCTCAGAAACCAACAAGTCCAGCAGGCTTTCATGGTTGGCTTCCGCATACAGCTTCAGCAGGGCCGTGTCGACATCATCCCTGTAGCCGTTGGCCACTTCGGTGCTGCGGATCTCATTCAAGTAACTGATGAGAAACCTCTTGCACTTGAGGATCTTCTCCTGGTCTCCCTGCGTCAGATGGTTGAGATCGGCGAACTCATGGAGTGGAGGGTGGCAGCGTGTGAAGGTGGACGTCGCCGGCAGGAGCAGAGGACACAGGGAAATAAGTTCTCGCACATCCAAATGGCCTTTCCTGCAAGGATCACATCAAGAAtgctgaaagaaaatacatacatagaccTAAAATCCTGCTCGCGAGTACTTTACATACATGCAGGTTTGAAGAATGCACTGCTTTGTTAATTAGGAAAGACATATTGAAGTACTTCAAAGTTCTGtccaatttttaaattattgaagtGCACGATCACTGATAAATTACACATAAACCCTATACTGCAAGACATCTAAACCCTCAAAGAGCAAACAACTGGGACTCTGCATTTGATCTGTGATAATGATAAACACTACTTTCAATAATGCAAAATAGCAATTTAAATCTCcatgttttttagtttaaatgtgttgcattgtaaaaaataaaatgacacacaaTAAGCAGTAGGATCAATTATGTTAGAACCTGAAGTCACCTGAAGTGTTCTTTAGCTTCTAAAAACTGAAGCTGTCCAAACTGTATGAATCCTGCTTGCTGAAGAATTCTTCTGTACATTATCTGGATGAAAAAGGGAAATCTGTGTTAGTATAAGAACactaaaagtaaaaacacaattcaaaccAAATAAAGATCTCCCTTCAGATGTACCATCATGATAAAAATGCATCACATTCAGTAAAAAACATTGGTATAGCATAACCAAACTAATTTAATTGCAACATTGTCTGTTAtgtaactattttatattatttgtgtaggctatatttgtttatattttctatcagggagaaattaaagtaaacttttattttatattcaggaTATTCTGATGCAGTTGACCTACAATGGCTTGTTTTCAGCATATAAGAAAATgttggggggaaataaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86679 lncRNA upstream 93010 9901450 ~ 9910048 (+) True G69384
TU86614 lncRNA upstream 626708 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 1112224 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1267119 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1866848 8133288 ~ 8136210 (+) True G69023
TU86728 lncRNA downstream 45843 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 46729 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 139331 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 215023 10223671 ~ 10224035 (+) True G69457
TU86811 lncRNA downstream 484499 10493147 ~ 10493396 (+) True G69499
AMCG00014338 mRNA upstream 8387 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014335 mRNA upstream 21465 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014334 mRNA upstream 86269 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014337 mRNA upstream 94796 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014336 mRNA upstream 194178 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014343 mRNA downstream 6855 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014342 mRNA downstream 116506 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014345 mRNA downstream 139804 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014344 mRNA downstream 147817 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014352 mRNA downstream 220352 10229000 ~ 10242261 (+) True AMCG00014352
TU86046 other upstream 2586464 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2653591 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5351094 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5351094 4649200 ~ 4651964 (+) False G68475
TU84897 other upstream 7292729 2706840 ~ 2710329 (+) False AMCG00014146
TU87778 other downstream 4328210 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5666983 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5666983 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6120877 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6457033 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile