RNA id: TU86728



Basic Information


Item Value
RNA id TU86728
length 221
lncRNA type intronic
GC content 0.30
exon number 1
gene id G69428
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10054491 ~ 10054711 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gacAAATATAAATCATGACTTATACCTTTCTTTTACTTCAAATCTGTGGTATTTGCCCTGTGTTTTGTAACacagtattatgtattatgctgcaattattttgttttggtatctATTGTGTCATTGTGTAAAAGATTTCAGATATATTATGTCGGTTGGATGGATATGTATTGGTGCAGTGagttttagttgtattttaggctatttacagtattttcgct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86698 lncRNA upstream 26140 9974424 ~ 10028351 (+) True G69400
TU86679 lncRNA upstream 144443 9901450 ~ 9910048 (+) True G69384
TU86614 lncRNA upstream 678141 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 1163657 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1318552 8734323 ~ 8735939 (+) True G69206
TU86731 lncRNA downstream 666 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 93268 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 168960 10223671 ~ 10224035 (+) True G69457
TU86811 lncRNA downstream 438436 10493147 ~ 10493396 (+) True G69499
TU86857 lncRNA downstream 782493 10837204 ~ 10838230 (+) True G69540
AMCG00014338 mRNA upstream 59820 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014335 mRNA upstream 72898 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014334 mRNA upstream 137702 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014337 mRNA upstream 146229 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014336 mRNA upstream 245611 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014342 mRNA downstream 70443 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014345 mRNA downstream 93741 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014344 mRNA downstream 101754 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014352 mRNA downstream 174289 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014351 mRNA downstream 253711 10308422 ~ 10318002 (+) True AMCG00014351
TU86705 other upstream 45843 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 2637897 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2705024 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5402527 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5402527 4649200 ~ 4651964 (+) False G68475
TU87778 other downstream 4282147 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5620920 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5620920 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6074814 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6410970 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile