RNA id: TU86759


Basic Information

Item Value
RNA id TU86759
length 365
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G69457
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10223671 ~ 10224035 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcagattgctgaaaaagttaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcacctacaatgggcacgtgagcatcagaactggaccacggagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86745 lncRNA upstream 71758 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 167938 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 168960 10054491 ~ 10054711 (+) True G69428
TU86698 lncRNA upstream 195320 9974424 ~ 10028351 (+) True G69400
TU86679 lncRNA upstream 313623 9901450 ~ 9910048 (+) True G69384
TU86811 lncRNA downstream 269112 10493147 ~ 10493396 (+) True G69499
TU86857 lncRNA downstream 613169 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 735291 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 997035 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 1417048 11641083 ~ 11641452 (+) True G69681
AMCG00014344 mRNA upstream 61506 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014345 mRNA upstream 72641 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014342 mRNA upstream 77969 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014343 mRNA upstream 152070 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014338 mRNA upstream 229000 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014352 mRNA downstream 4965 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014351 mRNA downstream 84387 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014350 mRNA downstream 128810 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014357 mRNA downstream 441358 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014356 mRNA downstream 497049 10721084 ~ 10754147 (+) True AMCG00014356
TU86705 other upstream 215023 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 2807077 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2874204 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5571707 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 4112823 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5451596 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5451596 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5905490 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6241646 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile