RNA id: TU86854


Basic Information

Item Value
RNA id TU86854
length 1432
RNA type TUCP
GC content 0.49
exon number 1
gene id G69537
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10796716 ~ 10798147 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAAAAGGCAAAAAGCTTCAGGACTACTTTGTAAAAGATCTTTAAATAGACAGATGGCATTGAAAAGTGCTGATCAGTTCTCccataacaaaacacaacaaacaaacaattaaattacaccttatatataaaaatgatttataagCCTCACATTGAacagtcaagaaaaaaaaaatatatatacataaatatatatacagtttgttgaatataaaaacactttcagaGCACTGTCTGTGGAGACTCACTTTCAGGTTCCCTTATTTTCCGTCCAGCTGCGGACTTTCTCAGGAGGCTTCGTCCCGAGCTGAAGAGTGTGGTCAGTTCATCGAGGGGGCTGGTCAGGGACCTGGCATTAGCAGGGTTAAATGGGAGGGGGGATGAGGAGCAGGAGTGTGACTTCCTGGGCTCCGTCCTCTGGGTCTTTACCGGGGAgtacggaggtttgttgcagCCCGAGGGCGCGTCTGAGAGACTGTGGCCCAGCTTCTGAGGGACCTTCGGACAATCTGAGTTGGAGACCGATGCTGCTCTGGCCAAGGCCAAAACACTGGCCTCAGGTGGGAAAGGGAAGTGCGATGGAGGTCGGTAAGGGGGGGGCATtgctggaggaggaggcagaagaggcggaggaggaggtgTAGGGGGTGGAGTAGATTTGTCCGCCATATTGAACACTGAGAGACTGGGTGACGAGGGTCTCTCGCTGTCTGGTTTCTGGTGTCGTGCGCACTGAGGAGATAGGGGGCTGTTGCCTTCTGACTGCCCCGGATAGTTCAGGTTGGTCTCCAGGACAGGTAGCTTCTTCACCTCCAGGGGTGTTAGAGGGGATTCGTCTGAAGCGGGAGAACAAGTGACGGGGGTTGGGGGGAAAACTAACAGAGGTGGCCGGTGAGGGAGCAGATTGGGGAATGGAGGGGGAATGTCACAGGTGCCATCTTTGCAATATGTCTTTCCTCCATGACCTGGATGAAAATGCTCCACTATTACTAGCTTTTTTGTCTCATATAGTTGCTGAGGAGACCTTTCTGGTTTTGAAAGCAGTATTTTAGCCGTTGTGCCATCTTCAGGCAGAAAATACTTCATTTCCTCATAGACAGACTCCCCCTGGTCTGGGGCGTCCACCTCAGGTAGACTCATGGCTCGAGCATTTCCAATCATTTCGATGTAGAcagcttcctcctcctcttgggAATGATAAAGACTGAGCACACCGTATTGTGGGCCGTCAGCAGATGCTGCCCTTTGGATCATTCCCAGACATTGTCCTCCCTTAGTAAAGCAAGACAGCTTAATTTCTGTAGGTTTGCGAACTGAAATCTCCTCATAGGAACCACTCAGTTTTGTGTTGGGGCTTCTTTTTGGCTTTGGAGGAGGAATCTTCTTCATTGTGCTGTAGTCATCACTATGAGGTCTTGGTTTTGAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86853 lncRNA downstream 527 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 3570 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 19275 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 23294 10773183 ~ 10773422 (-) True G69531
TU86847 lncRNA downstream 28458 10766600 ~ 10768258 (-) True G69530
TU86856 lncRNA upstream 17624 10815771 ~ 10821072 (-) True G69539
TU86933 lncRNA upstream 334641 11132788 ~ 11137086 (-) False AMCG00014365
TU87123 lncRNA upstream 971543 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 1080950 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 2172106 12970253 ~ 12970555 (-) True G69849
AMCG00014353 mRNA downstream 88698 10652279 ~ 10708018 (-) True AMCG00014353
AMCG00014354 mRNA downstream 269747 10525613 ~ 10526969 (-) True AMCG00014354
AMCG00014347 mRNA downstream 468485 10318244 ~ 10328231 (-) True AMCG00014347
AMCG00014349 mRNA downstream 495355 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014348 mRNA downstream 540341 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014358 mRNA upstream 101861 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014359 mRNA upstream 163102 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014360 mRNA upstream 176318 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014364 mRNA upstream 290600 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014368 mRNA upstream 306831 11104978 ~ 11121831 (-) True AMCG00014368
TU86630 other downstream 1479549 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2412492 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2638126 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2657590 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 3373425 7417598 ~ 7423291 (-) False AMCG00014278
TU87063 other upstream 861874 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17531592 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18591143 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21465020 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21799315 32597462 ~ 32614806 (-) True G73127

Expression Profile