RNA id: TU86875


Basic Information

Item Value
RNA id TU86875
length 2206
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G69556
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10959326 ~ 10961929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACACAATATGAATTTTGGAGGTGAAAAGATACACAGGGGAGTTAATTAAGTTTTCCTTTGATCTAATCTTGGTCTCGTCCTCaagtaactgaaaataatttgtttttccagttttggcTTGGTTACACATTTACCACAAAAgaatgagaggagaggagattGTCATAAACATCCCTGTGTGTTCTTGATTTTTCTAAAACAGTTGCCACATCGTCTTAATCGGACAGACAGCAGTCAGATAGTTAACTGTGATTTGCTATCGATTACCAATAACGCAAAGCATGTAAACAAGCACAAAAACTGGATGAGGTCCGTTTaaaaaaagccaaaacaaaacaaaatgaaaagtcatACAATCATTTGGCACGTATTCCCTAGGACAACTACCaaagtgtgtgtttagtttgcAAACTGGAAAACCCTAGGCATGTGTCATAAACGAATCACTACAAAACCTTAAGATGTGAGAATCTATGAGGTGTCtaacaggagaaaaaagaatGTTAACACAACTTTGTTACTTTTCCTGtaatgttctttatttaaatatacacctAATCGTTTTTGGAAGACAACTGCCTATTTATCAGAACACTATCTAAACGTTACCTGTTTAtttcacaaagcaaaacagcacAGTAGTATTATATATTAAGAATTAGGAAGAATTTAGTCTGTATACTCAAGTAATTCAGTGTACAAGTTTGTGTGAAAGTCTGTGGTTCATTTGGCATATAAAACcctgaaaattaaatacagaaaaaaaaaaaaaaaccttcaaaaCCTAGGGTGTAGAACTTAGAATATTTTTGTAACTGAGTAGTCATGACATGTTATAAACAGATTGAGTCTTAATGGGGCCAATATTAGCATACCCTGGTATATTGTTTTCGGGGAGTGTGGCtaccaattattttaaatcccccaaaatgtatttatgcacaTGGCTAGTTAAGACATAAGTAACACACGCAGAAACACATTATTGTCAAAGCATAATAGTTGAAAGATTAGTTCACTTTAAACATAGTGTGacaaacatataataaaaaagcacaagtTATCATCTGAGACAATCCGCATTCTATTgacatgtattatgtattaactaaaaaatatatttaaaagaggaattacttttctgttttgcaaaagagatattttttttaataaattacagcatTTGCTTTAGGTGTTATGTTTTATCAGccttaaaacatgcattttacattaGAGTAATTCTGATGGTACATGCAGCGGCCATTTTTTATTCCCCTTTGTCCATATGTCTATGATCATTACAATGTTCATGTGACTGTATTGTCCTTTCAGTTATTTCTGTACACCCAATAAAACCACAATTCTCTAATATGACTCTCCAATTCGCCATGTTAAAGCAACGCTCTACGTGTATTGGAAATATATCATATGTGTCATATGACTATGAGTGCTCAATTACAAATATCTCTAACAACTGAAAACCCCGTTCTTAACATTAGTAcatctttcaaataaaattatttatatctgtAGGCTGGAGTTAGGTGGTATCCACAAAAGTGAAggaactgaattaaaacatatatcaaAAGGTAGATATACAAGTAAGCATAGAATGCTTTTACTAATTGATAGCACCTGACTCACAAATATTCCTTTTAAATGGTCACCTGCTTACTTATATAGTCAGTGCAGTAATAAACAAAGTGCCATTTGGTAAAGAAACGATACTGAATGTTCATTTTTCTTAAAGATGTGCCAGTGGCAGGATGCATTTCATGGCTTGTTCTCCCATTGCTATGCACTATAGaaattgctttttcattttggtttacatctctcattttctttcttacaAAATAGCACCAtggtttgtaaaaataataataataatacaatgaagGCTTGACGAAAAAAACGTATTATGTCCTCTTCATGCAGACGTGGCATCGACTGATGTGGGTTCGTAAATCTCCTGCTTTCAGGGTCGTGGGCACAGGTTTTGAACATGTCACCAGTATCTATGGTAGCTAGCCAGAAGCTGTAGGAGTTGGCGTAGTAGTTGCAGGTGCCTCTGCCGTGGCACTCAATAAAGGGGGCGCTGCGGAACTCTTCCAGACAGGATCCGGGGGAGGCCAGGGCCTGGCCCGAACCCTCTGCTCCCGCGCTGGTGTGCTGTGGAGGGAAACGAGCAAATCTCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86857 lncRNA upstream 121096 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 465930 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 735291 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 807413 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 903593 10055377 ~ 10055733 (+) True G69431
TU86944 lncRNA downstream 259141 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 679154 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 757389 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 821936 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 1638175 12600104 ~ 12600313 (+) True G69778
AMCG00014355 mRNA upstream 158016 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014356 mRNA upstream 205179 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014357 mRNA upstream 287588 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014350 mRNA upstream 578905 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014351 mRNA upstream 641324 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014362 mRNA downstream 99666 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014363 mRNA downstream 135638 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014361 mRNA downstream 163470 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014369 mRNA downstream 216032 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014370 mRNA downstream 430460 11392389 ~ 11393405 (+) True AMCG00014370
TU86705 other upstream 950678 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3542732 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3609859 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6307362 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3374929 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4713702 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4713702 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5167596 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5503752 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile