RNA id: TU87100


Basic Information

Item Value
RNA id TU87100
length 2420
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G69722
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11719318 ~ 11722767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAAGGGGGTGTTATTTCACTTCAGAGACTCGGGCTCATCCTCTACGAGATTGATAACATGGCCGCAATCAAGGGCAGGGTGTGGCGCAGAGAGGAATACAATGTTAAATGCTACAGTTCAGTATTTGTTGCTAATCCACAGAAAAGCTCCGTCTGTCAGTGTTCTCCAGCGTTTCAGAATAACGCACCATTTTCACTTCTCAAATCTCCCCATGCTACTGTACTCTTTTTAATGTAGAAAcgttttaagaaaatgaaaaacaaaggcaCAATGAATTTCAACTCattcttttttaatatgcacAAGAGTTGAAGGAAACAATGAGCCACCTTAAAGAGAAATTGAATCTAAAATTTATAAAAAGATATAAATAATCAGAGGCCAAAATGCTatctgtcacattttaaaacaagtttcttTAGCAAGTAAAAATCTTGCAATGCACATAAGCTTGTATCGGTTTCTGATACAAGACAACTCTGCTCTTTAAAGTGGCTCTTTCTAGGCGTCTAGATATTTCATGAATGTACACCTGCTAAAGTTTTGTTCATCAGTAATAAATGGCTATTCCAGAAAGCTCCGACTGCATTCCAAATCCCGACATCTTTGCAGTAGTTAGCAGCCAAAACATAACTACATTAGTCCAAATGCAATTTTTCATCcctttacaaataaatgcacaggGAAACGAAGACATTTATGCCCAGTCACAACAGCAATAAAACCCATTCCAATAATGGTATCATCTTTATCACGATAcgcatgttaaaaacaaaactccctGTTAATTTCGACAGTAAATACAATGTTATTATTCTGCAGAATATCCCAGATGTACAGTTAGCAGCCACTGCAGCTTTTATACAAGCCTTATATATGACAATTGGAAagatatacttttttttgtacaatttaAGTTGTAGCATGTAaccttcaaaaagaaaaacagaaaaaaaaaaaaaaagtattgcaaaGGTCATGGGCCACATGATTcaattatttctttaattttaatactcTGTAATTGCTGCTTTTCACAATTATTAAGCACAGGTTACAGTTTTGAAGTGTGCGTAAGACTGAATTACTGCAAACTTGGAAGCTCCACAGATTAAACCCAGTACAATCCAACCATTgtcactacttttttttttttctcaatttaaactaaaaatatataatcaattctaaaaaggaaacaaataaaacaaaacaaaaaacagctgaaaGCAAGATCGGTAGTTATACATTTTAGGAGAGGAATTATCAGGACACTGCTCAAAAGTTTAACATCAGAACTCCTGCTTTCGTCTTGAAAAGCGTAACGGAGGTTGTATCTCAAAATACCATGCACAGCGTTTGACTACTTTGCTTTGAATGAGCAGGAACACAGGTTGAAATTAGTAGTCAAGCGGGACTTCAGTCTTCATTAAGTGTGATACTTTGTCAAGTGTCAGCTCCAAACAGAAGTTcagtttttatattgtgtttttccttttccttgtcCCCCAGACCTACAAAAATGAATGCtacaaaggttttttttgttttttgattttttaaagaatttaaGTAAAATGAACCATTTCTCCTCTTTTATCATTTGTCTTTTCCCCACAAGTAATTTTGTTCATtgtctttttacatttaaaaaaaatcccatctTCCGAAATgattctcaaaaaaaaaaaaaaaaaaaaaaaagctgaggCGATGGATGACAAAAGGTTCGCCCATCCACGTCGACATTTTCTCCTCCACTTGCATTCTTCTCAAAAATCAAAGCTCTTCAGCCGTAATCTGGAGATCATTTCGCCACGTGCCAAGTTCTGAGTTTCAACATCTAAAAACAGGGATACTGGTTTTAAAAGTGATTACTGGAGTTGGTGGTGAGAATGTGATACCAGGGAAggaaaggcaaaaaaaaaaaaaaaaaaaaaaaaacacatttgaaaatgctAGGATTTTTCTCTTCACTGATATGATGGCAAATAAAATGGGTTCATATATTCATGCACACGTAATCCTTAGTCTGTGTGATAGCAACGTTTGGCAACTGCAGAGTGACTGACAAGAGGCTTTTATTTCTTACTTTAGAAGCATCATTCGAAGATGCACAAATTGTCTTTTGATCcttcagtgcttttttttattttatatattttttttattgtatttttttctggttaGTGAATCTTGTGGTGTATTGAAGTTGGTAGGTGGTGCAGAGCAGCTGTAAAATCCAATTCTCCTTAAAATTTGAACTCCTTGGTTTGCAGATTGGAGGCGGGGTCAAAATTGAAGGTTCCTCCTTGAGTAGCTTCAGGGATCAGGCTGGGATCCTCATCGATCTGCAACAGGAGGGACGGGCAGCAGTCAGAATTAGGGTCGCAACATCACAAGACAATGGCTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87041 lncRNA upstream 77866 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 498044 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 757389 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 881088 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 1225922 10493147 ~ 10493396 (+) True G69499
TU87118 lncRNA downstream 61098 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 877337 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1257492 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 1523542 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 1523542 13246309 ~ 13251732 (+) False AMCG00014407
AMCG00014381 mRNA upstream 7387 11711398 ~ 11711931 (+) True AMCG00014381
AMCG00014377 mRNA upstream 22392 11689233 ~ 11696926 (+) True AMCG00014377
AMCG00014378 mRNA upstream 41137 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014376 mRNA upstream 59772 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014373 mRNA upstream 78858 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014382 mRNA downstream 37134 11759901 ~ 11761901 (+) True AMCG00014382
AMCG00014375 mRNA downstream 43661 11766428 ~ 11767590 (+) True AMCG00014375
AMCG00014383 mRNA downstream 147258 11870025 ~ 11877714 (+) True AMCG00014383
AMCG00014387 mRNA downstream 177755 11900522 ~ 11901421 (+) True AMCG00014387
AMCG00014388 mRNA downstream 220808 11943575 ~ 11944826 (+) True AMCG00014388
TU86705 other upstream 1710670 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4302724 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4369851 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 7067354 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2614091 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 3952864 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 3952864 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4406758 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4742914 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002431 True 3998 mRNA 0.43 17 NC_007112.7 46666696 ~ 46706639 (-)
grasscarp (Ctenopharyngodon idella) CI01000119_01766511_01769770.mRNA True 2565 mRNA 0.38 4 CI01000119 1764593 ~ 1769796 (+)
tiger barb (Puntius tetrazona) TU7477 True 2821 lncRNA 0.36 3 NC_056699.1 22715536 ~ 22733117 (+)