RNA id: TU87118



Basic Information


Item Value
RNA id TU87118
length 219
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G69739
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11783865 ~ 11784083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GcccatctgtgtgtgttcaaGCCGCCGTTTGGCCCTGATTAACAGTGCGATACTGAGATTACTGTACAGCTCCTGCAATGACAGTGTCGCCGGCTGCGCAGCCTTTCTGCTCCCGCTCCCGCTCAAATCCACCGTTAAAAACAGCCCCAAACGGCCGAAAACGAGGGTTTCAAAGCCTCCATCGCAATCGTCACGTCCCCAAATAATTTTTAACaattt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87100 lncRNA upstream 61098 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 142413 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 562591 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 821936 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 945635 10837204 ~ 10838230 (+) True G69540
TU87160 lncRNA downstream 816021 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1196176 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 1462226 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 1462226 13246309 ~ 13251732 (+) False AMCG00014407
TU87406 lncRNA downstream 1550131 13334214 ~ 13335185 (+) True G69959
AMCG00014375 mRNA upstream 16275 11766428 ~ 11767590 (+) True AMCG00014375
AMCG00014382 mRNA upstream 21964 11759901 ~ 11761901 (+) True AMCG00014382
AMCG00014381 mRNA upstream 71934 11711398 ~ 11711931 (+) True AMCG00014381
AMCG00014377 mRNA upstream 86939 11689233 ~ 11696926 (+) True AMCG00014377
AMCG00014378 mRNA upstream 105684 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014383 mRNA downstream 85942 11870025 ~ 11877714 (+) True AMCG00014383
AMCG00014387 mRNA downstream 116439 11900522 ~ 11901421 (+) True AMCG00014387
AMCG00014388 mRNA downstream 159492 11943575 ~ 11944826 (+) True AMCG00014388
AMCG00014394 mRNA downstream 1039470 12823553 ~ 12834319 (+) True AMCG00014394
AMCG00014393 mRNA downstream 1050867 12834950 ~ 12841128 (+) True AMCG00014393
TU86705 other upstream 1775217 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4367271 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4434398 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 7131901 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2552775 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 3891548 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 3891548 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4345442 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4681598 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile