RNA id: TU87123


Basic Information

Item Value
RNA id TU87123
length 534
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G69743
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11769690 ~ 11771393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTTCAACAACCAGAAGCCATTAGAGGAGGTTTCATGCACCCACTTTAAAACCAGGGAACTGAATGTCAGGAGTATGATGGAAAATTCAGCTTAAGCTCCATGTGATGATGGTGGACTTAAAGATTATCAACAAATGTTAGATTTATGGTCTCATCTCCTCTATTTTTAATCAGCCTGTAAGTATTGCCCTCTCTGGTTTGTTTGCTTCAAATCACTCAAATGCCTTAGTAATGCCATTTTAACAAGCTGCTAGCATGTTGCTCAGCTGGATATAAGCCTAAATATTTTCAATGGCCAGAGGTGGTGATTCAAACTAACCTGTAGATCTAcatacatttaactttttaaccCATTtggattcttcttttttttgcatacttagCAGTAATTTGACCAATATGAAGTTACCTACATGCTGCTAATTTTGTGTCAAAGTATAagctgaatttatttattttttctcctgtggtttattttaccaatggtctcttgttttgtttcttgtgaattaaaatgggttgctttaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86933 lncRNA downstream 632604 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 948618 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 973501 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 976544 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 992249 10777051 ~ 10777441 (-) True G69532
TU87141 lncRNA upstream 107704 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1198860 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1313970 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1313970 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA upstream 1313970 13085363 ~ 13086345 (-) False G69896
AMCG00014379 mRNA downstream 14229 11750191 ~ 11755461 (-) True AMCG00014379
AMCG00014380 mRNA downstream 47237 11697189 ~ 11722453 (-) True AMCG00014380
AMCG00014374 mRNA downstream 102153 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014372 mRNA downstream 267089 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014367 mRNA downstream 594248 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014385 mRNA upstream 95218 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014386 mRNA upstream 111102 11882495 ~ 11891473 (-) True AMCG00014386
AMCG00014384 mRNA upstream 122367 11893760 ~ 11895883 (-) True AMCG00014384
AMCG00014390 mRNA upstream 212680 11984073 ~ 12003809 (-) True AMCG00014390
AMCG00014391 mRNA upstream 425646 12197039 ~ 12199190 (-) True AMCG00014391
TU87063 other downstream 107197 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 971543 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2452523 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3385466 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3611100 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 16558346 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17617897 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20491774 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 20826069 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 20826069 32597462 ~ 32619149 (-) False G73127

Expression Profile