RNA id: TU87141


Basic Information

Item Value
RNA id TU87141
length 1360
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G69759
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11879097 ~ 11880456 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTGTTACTTCATTTATTTGATCAAACTTAACATTAGacttaatgttaaaaatattattgttaactTCATGTTATTTAGTCTCTTCTGTCATATTTAGAGAGAACCCAAGTTCTGATTTGCATATGagaaatattttgtatcaatgtaaCATGTACACGCCTTTTAGTTTTTCAAACCAGTAAAAAAGGTGGCTTAGGCAATCAGGAAGCTATTCTTCACACAAAATAGCCTTCTGAACACTGAGACCTGATTAATCCCCAGCCTCCCAGAGTAAAAGGTATTCATCTTCTGAGTCTGAAACACCCTGTATTGagagagcacagacacacaacacacttaTCAAAAGGTATAATTGTGCTTACATTTGCAGACACAAAGCTTCAAAAGCAGTACATTTGTGCTTACAAAAACATTCAGATCACTATAGACATTCTGCAAAATCAAATAGGgtaaaatgcttttatatacGTTTTTGTTATGCGTGTatctatttacattaaaatgcttttatgaaataaaaaattgtattgatATTAAGCATGCTCAGCATTGATTGCTGTTTTTGCACTACACTACCACTTTAAACCACCAGGGTCCTCTAAACTCCATTCTTGGAATCACtggaattattaatattagtatttatttctggGCAGATCCACGTTTCATTGGCAACGAATAGTTTAtagaagcattacaaaagtgcagtcatacaaatcaatacaaaattcaatttaagcattacaacAGTGCAGtaatataatcaatacaaagtacaatttaaacattacaaaaatgcagtcgtaaaatgaatataaaatagaCAGAAATGACAAGAACATCCCATAGACACAGCTGCTAATACAgaattaatataacattttgtagTTTCTGCAGGTACAACATGATAGATCAATTGCACCTGCGGATGACCTTGTGGTTCAGAACTTGACGAAGTGTTAGTTGTCACCAAGTGCTTTGAACCAAGAACCTCCATACAGTCCCCAGGTCTGGATTAAACATGTTCTCAATTGCAGCAAACTCCAAATCATGACTGCTGACCCCTACATGTTCCTGGTTTATTGTGCTAAATAGATTGTTGTCAGCAATTGCATTGTctaagcaaatatatattttcattagcGAATAAGACACCACAGCAAAAAACAgcatataacaataataatatgtaagaTAATGTTGGTTCGTCCGCTTCCCTCCTTTGGCAAGTCTTTCATCTTTCTCCCCCTTTTCTGAACTatctgaggaaaaaataaatacaaaacatataataatcACTCGCCCTGTTTGTTAACTAACTTTCCAAATGTAAAGCTTCGAATGCACTGGCGCTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87123 lncRNA downstream 107704 11769690 ~ 11771393 (-) True G69743
TU86933 lncRNA downstream 742011 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 1058025 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 1082908 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 1085951 10792919 ~ 10793146 (-) True G69535
TU87239 lncRNA upstream 1089797 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1204907 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1204907 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA upstream 1204907 13085363 ~ 13086345 (-) False G69896
TU87328 lncRNA upstream 1207152 13087608 ~ 13096336 (-) False AMCG00014412
AMCG00014385 mRNA downstream 11568 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014379 mRNA downstream 123636 11750191 ~ 11755461 (-) True AMCG00014379
AMCG00014380 mRNA downstream 156644 11697189 ~ 11722453 (-) True AMCG00014380
AMCG00014374 mRNA downstream 211560 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014372 mRNA downstream 376496 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014386 mRNA upstream 2039 11882495 ~ 11891473 (-) True AMCG00014386
AMCG00014384 mRNA upstream 13304 11893760 ~ 11895883 (-) True AMCG00014384
AMCG00014390 mRNA upstream 103617 11984073 ~ 12003809 (-) True AMCG00014390
AMCG00014391 mRNA upstream 316583 12197039 ~ 12199190 (-) True AMCG00014391
AMCG00014389 mRNA upstream 841286 12721742 ~ 12726644 (-) True AMCG00014389
TU87063 other downstream 216604 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 1080950 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2561930 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3494873 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3720507 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 16449283 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17508834 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20382711 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 20717006 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 20717006 32597462 ~ 32619149 (-) False G73127

Expression Profile