RNA id: TU87239


Basic Information

Item Value
RNA id TU87239
length 303
lncRNA type intronic
GC content 0.55
exon number 1
gene id G69849
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12970253 ~ 12970555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCCCTTCCTTTCTTGGTAATTCCTTCCCAAAGTGCATGGGTATCTGTGGAATTTCCTTCCTGTACTGGGGTATCATGGGGATTTCTTTGCCATAGTGCAATGGGGGCATTTCCTTGCCCAGGTGTTGCATGGGAATGCCTTCCTTGCCCAGGGGCAGGTGAGGTAACTGTTGCATGGGAGGGTGCTGCTGGGGCATTTGCTTGTGCCCATAGTATGCCCCTGATTGGGCCGAGTGGAACAGATACAGGTGAAGAGCGACAGCAAGCAGCCGTGGGGGGAGGAGTGGCACGGCCATGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87141 lncRNA downstream 1089797 11879097 ~ 11880456 (-) True G69759
TU87123 lncRNA downstream 1198860 11769690 ~ 11771393 (-) True G69743
TU86933 lncRNA downstream 1833167 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 2149181 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 2174064 10795883 ~ 10796189 (-) True G69536
TU87308 lncRNA upstream 114808 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 114808 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA upstream 114808 13085363 ~ 13086345 (-) False G69896
TU87328 lncRNA upstream 117053 13087608 ~ 13096336 (-) False AMCG00014412
TU87397 lncRNA upstream 331369 13301924 ~ 13302379 (-) True G69950
AMCG00014397 mRNA downstream 94717 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014396 mRNA downstream 189415 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014395 mRNA downstream 230588 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014389 mRNA downstream 243609 12721742 ~ 12726644 (-) True AMCG00014389
AMCG00014391 mRNA downstream 771063 12197039 ~ 12199190 (-) True AMCG00014391
AMCG00014412 mRNA upstream 117107 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014411 mRNA upstream 204656 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014408 mRNA upstream 238190 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014413 mRNA upstream 271271 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014410 mRNA upstream 281380 13251935 ~ 13260989 (-) True AMCG00014410
TU87063 other downstream 1307760 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2172106 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3653086 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4586029 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 4811663 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15359184 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16418735 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19292612 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19626907 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19626907 32597462 ~ 32619149 (-) False G73127

Expression Profile