Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU87406 |
| length | 577 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G69959 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 13334214 ~ 13335185 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU87357 | lncRNA | upstream | 82482 | 13246309 ~ 13251732 (+) | True | AMCG00014407 |
| TU87358 | lncRNA | upstream | 82482 | 13246309 ~ 13251732 (+) | False | AMCG00014407 |
| TU87223 | lncRNA | upstream | 351780 | 12980259 ~ 12982434 (+) | True | G69833 |
| TU87160 | lncRNA | upstream | 733901 | 12600104 ~ 12600313 (+) | True | G69778 |
| TU87118 | lncRNA | upstream | 1550131 | 11783865 ~ 11784083 (+) | True | G69739 |
| TU87408 | lncRNA | downstream | 17148 | 13352333 ~ 13379593 (+) | False | G69961 |
| TU87409 | lncRNA | downstream | 42349 | 13377534 ~ 13380404 (+) | True | G69961 |
| TU87516 | lncRNA | downstream | 347858 | 13683043 ~ 13684492 (+) | False | AMCG00014423 |
| TU87518 | lncRNA | downstream | 359630 | 13694815 ~ 13696871 (+) | True | G70054 |
| TU87727 | lncRNA | downstream | 832261 | 14167446 ~ 14171012 (+) | True | G70221 |
| AMCG00014415 | mRNA | upstream | 3124 | 13323367 ~ 13331090 (+) | True | AMCG00014415 |
| AMCG00014416 | mRNA | upstream | 32341 | 13291329 ~ 13301873 (+) | True | AMCG00014416 |
| AMCG00014417 | mRNA | upstream | 49920 | 13276573 ~ 13284294 (+) | True | AMCG00014417 |
| AMCG00014414 | mRNA | upstream | 59911 | 13266017 ~ 13274303 (+) | True | AMCG00014414 |
| AMCG00014407 | mRNA | upstream | 83934 | 13246350 ~ 13250280 (+) | False | AMCG00014407 |
| AMCG00014419 | mRNA | downstream | 5002 | 13340187 ~ 13360020 (+) | True | AMCG00014419 |
| AMCG00014418 | mRNA | downstream | 26563 | 13361748 ~ 13371376 (+) | True | AMCG00014418 |
| AMCG00014420 | mRNA | downstream | 114913 | 13450098 ~ 13451219 (+) | True | AMCG00014420 |
| AMCG00014422 | mRNA | downstream | 255735 | 13590920 ~ 13615018 (+) | True | AMCG00014422 |
| AMCG00014421 | mRNA | downstream | 295482 | 13630667 ~ 13650074 (+) | True | AMCG00014421 |
| TU86705 | other | upstream | 3325566 | 10003058 ~ 10008648 (+) | True | G69406 |
| TU86046 | other | upstream | 5917620 | 7413640 ~ 7416594 (+) | True | G68848 |
| TU86015 | other | upstream | 5984747 | 7346195 ~ 7349467 (+) | True | G68830 |
| TU85565 | other | upstream | 8682250 | 4649200 ~ 4651964 (+) | True | G68475 |
| TU87778 | other | downstream | 1001673 | 14336858 ~ 14356868 (+) | False | AMCG00014461 |
| TU88057 | other | downstream | 2340446 | 15675631 ~ 15679788 (+) | True | AMCG00014490 |
| TU88058 | other | downstream | 2340446 | 15675631 ~ 15679788 (+) | False | AMCG00014490 |
| TU88218 | other | downstream | 2794340 | 16129525 ~ 16132802 (+) | False | AMCG00014508 |
| TU88385 | other | downstream | 3130496 | 16465681 ~ 16469113 (+) | False | AMCG00014525 |
