RNA id: TU87409


Basic Information

Item Value
RNA id TU87409
length 2506
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G69961
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13352333 ~ 13380404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAACAGTAACATATTTACTTTCATATGGTGCCATGAATAAGTGCAGATCTGGGTGTAGGAGCTGAAACAATCACTCACATAtggtacatgttttttgtttttatataattgtaatttattgaatACGGGGTTCACTCCTCACTTATATGCTGTCATCCAAAtgaatacaacaacaaaaacaatttacaaaggACATTTATTGAAATTGCTTTTTGAAAGAACATCACTGCTGTTTTCCTCATACTGTTGTTTGTACAGTGTAGGAATATATTCATCTCTGGTTTATCGGACATTTGAAATGCTGTACTGAACATACGATCCAAATGGAGAGAACAGGGCAGATGTGTTGGTTGAAGTCCCTGAGAGTGGATTGGACTGCAGCAAAGGTGTCAGTGGTAGTTGATATACAGCATGCCAACTaatggtggggaaaaaacaataccttcagctttctgaaacaaaataacaccTTAACATTCAATATAACTGTTCTGGATTGTGCGCTTAAGAGCCTTTGTACGTACTAATGAAAATAACGAAATACCGTGAACTGATGGGAAGCAATAGAATGCCAATAAACTATTGTAATTAACAATGACTCTGCCGTCAATGCTTATCGGTttctgaattaaacaaatcaatttcaaCACAATTGGGATAACATATTCCACTTCATTTGAACATCCCATTGGCAGCTGGAAAATGATATGTAAACCTACTGTAAAATTATTCTTCATAAAAAGTAGATGTTAAAATTAGTGTCACTTCAGCTGCACAGGCCACAACATGTCCAAATCGCACCATTAAAGTTTTACATTACTTTGGCAGACGAGACCCAAGAGACAATCCATGTTTAAACATGATTAACCACACAGTATTCATGACTTCATTCATGAGATTAATATATTTGGTACATGCTTCATTTATATAGTGCAGTACACAGTGTATGGTAGGCAATAATATACCAACAATTATGCCTGCCACTTACAAATAACCATTCCCAGTAGAAACTGTTCTAAAATAGAAATATTCATGttcaatgatttaaaaaggttgccaatttaaaatgtcaaaacctacacctaatatatatatatatatatatatattagttctATTGAAAAGGGTATTGGGGAACTATGGCATCTCAAAACCAATAgtaatcaatattttgtatgtgaGTGTTGCAGTACTACATTAATACCCAAAAGACTCCTCAGACTCAGGGATAAGTGTTAGACtaactgtaaaatatgaagCCAGGAATAGTCTTGGATTTTGAAGGCCTTCATTAATTACAGCCTGAGAAAGACTCTGCAAACCAAACTTTATGCGTAGGAACACATCATCATTAAAGAGGTACTAGCAGGAGAGTCTGGGATGCGTACTGTGGTGGCAGAAGACTCGAGGCTTCATGCAAGTGGAATTGGTGACAAGGCTTTAGTTGTTTTCTGAGGGGAGACGTTTTTGGCCAGCAAAAGCAGAGTATTAAGTCTGTTTCAGGAGTTATAACTTGTCACCCTCAGTCAGTGTGGCATTAAGAgtttgcatttataaaataaaaagtagatttaaatgttttaacattgtCTTAAATGCAAAGTAGTATTTTTATCACCCCCTGATGAAAGGTGATTTTGATTGTTCTGCTTCTAATGCAGCAGTTTAAAGATGCACGAGTCAGCATTGCGTCGATATGTCAGCAGtgtcagatatatatatatgtaataggAGAGCTTGGCTATGTGCAGCTGTTTTACACATCCTGAACCTCCATGGCCTCCTTCGGCCAGGAGTAGCAATCCAGGGAGAAGGAGTCGTAGTCAGGGCTGTAGATGTGAGAGCGGATGAAGGCCTCTTTGTCTTTAGGCTCAGGGTACCACGAAGCAATGTCCTTCTTATAGGCATAGTCCACAATCTGACAGCGATTTTGAAGGAAACCTCCCTGATGGTGCTGAGAGGAGGGTACAGTCGCCCTTCAGCCAGGTTCTCCTCTGTCACCATCTCAGCGATGGCCTGAGGGGGATACAGTTTTCACTAGAGTTTGTGCATGTGAAGAAAACCACAGACCTCAGAGCAGCATCTTTCTGTGGGCTTCATGTAAACTCCAGTGGGTCATTTTGCTGTACTGGTTGCCAAAcagctacattttaaaagattacaTTACTGAGACTCAGAGTGATGACAATTAGACCCAATTTCAATCACCCAAAAACTAAGGTGACTTCATgtcattaaaagcaaaaacaaggaTTTGATATACAGAGGTGTGAGTGGCAGGCTGTACCTCTGCGGTGGTGAGGAAGATGTCATCAGAGATATGGCGTACGCCACAGGCTATCACCCCCAGAGCCACCCCTGGGAACACATAGGCATTGTTGCCTTGGCCTGGGATGAATGTGCGTCCATCAGGCAGCGTGACTTTATCGAAGGGACTGCCACTGGCAAAGATGCCACGACCCTGGCAAAAAGGAGTGGGGaaaaattacattacatcatTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87406 lncRNA upstream 42349 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 125802 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 125802 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 395100 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 777221 12600104 ~ 12600313 (+) True G69778
TU87516 lncRNA downstream 302639 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 314411 13694815 ~ 13696871 (+) True G70054
TU87727 lncRNA downstream 787042 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 813375 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 817576 14197980 ~ 14199308 (+) False AMCG00014456
AMCG00014418 mRNA upstream 6158 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014419 mRNA upstream 17514 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014415 mRNA upstream 46444 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014416 mRNA upstream 75661 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014417 mRNA upstream 93240 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014420 mRNA downstream 69694 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014422 mRNA downstream 210516 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014421 mRNA downstream 250263 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014423 mRNA downstream 274834 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014424 mRNA downstream 363717 13744121 ~ 13747498 (+) True AMCG00014424
TU86705 other upstream 3368886 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5960940 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6028067 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8725570 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 956454 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2295227 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2295227 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2749121 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3085277 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile