RNA id: TU87421



Basic Information


Item Value
RNA id TU87421
length 305
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G69973
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13304426 ~ 13375879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCTGTTCCTGCAAGATCTGTTGGACGAGGGCAAGGCTCCATCTATGCTCAAAGTGTACCTGAGGGCCATTTCCACATGCCACACccagattgatggcgagccaCCTGGGGCACACTTCCTGGCCTCCCAAGTTTTGAAGGGTGTGTTTAGGCTATGGCagggcgccttgatgtagtgctggactcACTTTCCAAGGCCCTGTTTGAACCACTACACTCCGCTGACCTCAAGATAGTGTCACTGAAGACCGCGTTTCTGCAGCCAAAACCGGGTTATGCAGATTATGGCGACCAGTCACACCttg

Function


GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87397 lncRNA downstream 2047 13301924 ~ 13302379 (-) True G69950
TU87328 lncRNA downstream 208090 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 218081 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 218081 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 218081 13085363 ~ 13086345 (-) False G69896
TU87498 lncRNA upstream 247236 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 318878 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 383347 13759226 ~ 13761420 (-) True G70091
TU87572 lncRNA upstream 394298 13770177 ~ 13772272 (-) True G70094
TU87667 lncRNA upstream 543642 13919521 ~ 13921330 (-) True G70169
AMCG00014409 mRNA downstream 38877 13262379 ~ 13265549 (-) True AMCG00014409
AMCG00014410 mRNA downstream 43437 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014413 mRNA downstream 61774 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014408 mRNA downstream 66898 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014411 mRNA downstream 100619 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014437 mRNA upstream 1783 13377662 ~ 13408576 (-) True AMCG00014437
AMCG00014434 mRNA upstream 67391 13443270 ~ 13473171 (-) True AMCG00014434
AMCG00014432 mRNA upstream 102469 13478348 ~ 13487613 (-) True AMCG00014432
AMCG00014438 mRNA upstream 122847 13498726 ~ 13527602 (-) True AMCG00014438
AMCG00014430 mRNA upstream 155316 13531195 ~ 13536369 (-) True AMCG00014430
TU87063 other downstream 1641933 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2506279 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3987259 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4920202 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5145836 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14953860 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16013411 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18887288 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19221583 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19221583 32597462 ~ 32619149 (-) False G73127

Expression Profile