RNA id: TU87518


Basic Information

Item Value
RNA id TU87518
length 2057
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G70054
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13694815 ~ 13696871 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGGGATGTATAGGCACCACGTGGCAGTGCAGTTggttaaaacacaaaactcatGAATGTCgtatttaaaagggaaaattgcaattttatttaattttaaacctaGAAGACCTTGTTTGCTTATTCTCATCTCGTCTAAACTTTGAAGTGTCTAGTACATAATCTCTAGACCAAAAGATGGACTTCGTtcattttgcatatttcttGCATTCAATTTATCCATAAAGCAACCACTTAAGACCAAATGTATACTATTGACACtttctttactttaaaaaaaaaaacaaaaaaaaaaacaccaaaacttacttcagttttaatttttgacAATCCTTATTCCATTTCCTCTTGATTTTTTGAATGTAGATGTTGGTGTGATTGTACTGCCTTGCTGGTTGTAGCATATATGTCCCAGACAACTTCTTCAGAGAAAACCAAAGACTTCTTAATGATTGTATGAACTAAACAGTCTTCAGTCCTGCATCAGCCTTTATTTCACAAAGAGAAACATGAGTTTCAAACTGGGGTGGTAcatgttttgtgtcatttaatTTCAACAACATGCAGAATATGAACACAAACGTGTTGTATATAAAATCCATTATTAGTCTCTCCTTGTGTGTGGCCAGAACTTAAGTTATATAATAACCTTTAAAATTGATACAAGTATTTTTTACCCATGAAATTTCAAACCGTATGCAGACTTCTGGTACTTTAGACATTGTTTGGTCAAAGGCTTTTTTGAATCATTGACTGTAGTGTGGGGCGTGGTGGGTAGAGGCATGGCAGAGTTTCTGGGCATCTCTCTTGGTCTGTAATCTGCCTATTTATCAAGGAAGAGACTCCTTAGACTAACAGACCCTCAGGTGCTTAGCTACTGGTTGGGGGGCTGAAGACAGGGATGTAATTGGCTACTCTGATGGGTGCTTTTATTAACCCTTTTGTGGGCTGGGTGATGTGAATTAATACACACTGAGGTATTCTCCTGAGCGCACTGCAAATGCTTAggagaagctgttttttttttttaactgctagctctttttttttttctgggatttaactgtttttgtttcccttttttatttaatttaattttccttctaCACTGTTCCACTGTGCAACTATGCATTGTAGTCCTCAACCTTATGCTAGATATGTCTAAATGTTCTTGTGCATTGGTAAatgaaggatttgttttttttttttgttggtttttttattttatttttttagtggGGGGTTGTAGGATCTTACAAGCTCTATCCCAAAGCAAAAATCCAAATATTAAATGTACGCCTGACGCAAATACCAAAGATTTGTTTCTTCTTGCAAAACCTTAGGCTTGTGTATTAAATGCAGTTACCCAGCACTTGCATTAGTCTAACCTCAGTAATTCCAAAGCTTAGATGTATATTTTGGTATATTTCTGGGATAATTAAAAGGTTTTGTGTCGTTTAAAATTCTTGTTCGTTTTGGTGTATTGCTCTCTTCAGTCATagcatggagaaaaaaaatactgaactgTCTTACTCTTGGTAGtttaaaaaatagtatttttgtatgttttgggtGTGTCAATGTTCGTGATATCAGTTTTCACTGCCCGGttatcatgatttaaaaaataaaaaatgtacatattaattcAGTTGTAGATTTCACAGAATGATCATTCtgtataattgcattttcaCCGACTGCAGTTTCAGCTAAAGGATTGTGTCCCCATTTTAACTTAATatgacaaattacattttttcctatacacacacacactgtagatTTCAATTTGAAGTTGGTCTAAGATTTTGTTCCTGATGTACATCAATACAGCCAGGCCATATCCAAATCATGGATTGCTGCCTCAAACACAAGCAGCTACATGGCTGGGATGTTATGGTTTTCAGCCAGTACATGTCAAATGGGGATACATTTCTTTTTGCTGCCAGTTAAAAACAGCTACAACATGGTGGCTTAGATCTGAAAGATTGTGTAGAAATTTAAGTATGTGAATCAGGATAAATGGTAGATTTGTGTAGATGCATTtgtctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87516 lncRNA upstream 10323 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 314411 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 315222 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 359630 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 443083 13246309 ~ 13251732 (+) True AMCG00014407
TU87727 lncRNA downstream 470575 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 496908 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 501109 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 769833 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1482974 15179845 ~ 15180820 (+) True G70286
AMCG00014423 mRNA upstream 5627 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014421 mRNA upstream 44741 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014422 mRNA upstream 79797 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014420 mRNA upstream 243596 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014418 mRNA upstream 323439 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014424 mRNA downstream 47250 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014426 mRNA downstream 52802 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014425 mRNA downstream 94278 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014427 mRNA downstream 123485 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014439 mRNA downstream 185848 13882719 ~ 13903655 (+) True AMCG00014439
TU86705 other upstream 3686167 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6278221 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6345348 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9042851 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 639987 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1978760 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1978760 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2432654 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2768810 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU58759 True 3483 lncRNA 0.37 1 CI01000009 3287328 ~ 3290810 (+)
rainbow trout (Oncorhynchus mykiss) TU2031519 True 5207 lncRNA 0.42 2 NC_048586.1 8820929 ~ 8826155 (-)
eurasian perch (Perca fluviatilis) TU169227 True 1256 lncRNA 0.43 1 NC_053123.1 20958707 ~ 20959962 (+)