RNA id: TU87569


Basic Information

Item Value
RNA id TU87569
length 1657
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G70091
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13759226 ~ 13761420 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttataagtCTTTTTATTCAATTACACACATCACATATTAGTACATTTCTTAGCacatgcccttatccagggcaatttacaattgttacagtatatcacattatttttacataagaatacccatttatacagctgggtttttactggagcggTGTAGGTACTGTGCCTTGCTCAAATGTGCAACAGTAGCATCCCCCGCCTGGGATTGAATCCACAGCTCTCGAGTCCAGGGCCCTGACCTCtattccacactgctgccccatATTATTcccataataaaatataaataaaattgactttatttataggtatgttcACTGAAGGAGATTAAGATTACATATTGCCATCATTATAACATGAATGATTCTGTTTTGAAAAACTACAAATCCACAGTTACTCACTCTCAGGGAAGGAAACCGCTCTCTAGGTAATCGTGGCATTGCCAGTGACACTGCGTTCAGCTATGTGCTTGTGTATCCAGTCCAGGTAGTTGGACACTTTGGTGTATATCCCATAATGCCCAGGCTGTGCACAGCCCTTCCCCCAGCTGACAACCCCAGTCAGGAACCAGGTGTCCTTGTATTTGGTGACCAGAGGGCCCCCGCTGTCTCCCTTGCAGGAATCCTTCTCTCCCTCAAAGTAGCCGGCACAGAACATGTTGTCTGTAATATTGACCTTGCTGTACTCGATGCACTCTTTTGACTTCAGTCTGGGGACCTCCAGTTGTTGAAGGACAATGGAGACAGGGCCATTCTCACTGCGCTTGCCCCACCCACTCACTGTGGAATAGCGAATGGCAGTCAGCTCCCTCTCAGAGAACATTTGCTCCGGCAGACAGATGGGCACAACGTACGTTGAGTAAACAATGGGCTGCTGCAATTTCAGCAAGGCGATGTCATTGTCAGCCGTCAATGGCACATACTTCTCATGAATTATTATCTGAACCACTTTAATTGTCTGCTCAGTGCCTTCATTCAACTCTGTATGATGTTCACCTTTggttaagagaaaaaaaaAGCCAATTGCCCCACTCTTCAAGAGACACACTACCATACCTGCCAAGGACAGTGTCCCTTTGTACACTCTGTCCCCCCAACAATCCGCCCACGCTGTTGATCAGGGTTATCCATGACAGACGACGGACTTTTCTGAACAACAGATACCTTCCCACAGGGATACTGCActgtgagacacagagagagaggcccaCTGGGCTGTGACTCATGGGCTGTATCCCAGTTCAGTGTTTTCTTATGAGGTAGGATCTTTAACTGCTTTAACataattgtgaaatgtgttgtgCATGATGGGTGTGTAACAGCCAAGATGTTTAAGCACAGATACAGTAGTAAGAAATAAACCTATTAAGCGTCACCCCTTGGTTAGAAACAACTGATCTTGACAGTATGTATAAGTGAGGACAATAGCAGCTCTGGAGTTAGGCACCACTGCTttaacactttatatatatagtcatatgCTCTTCTCATGGTGATATTAAATCGGGTTTTATTCACCTTGTGGAACACACCCCTGTCCGTCCTCCGCAAGCGCATAGCCCTCTGCACACTTGCACAACCGTTGGACCCCACTGCCATTACAGTAGTGCTCACATCCTCCGTTCAGGTAGGGACACTTGAGAATATTGTCAG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87527 lncRNA downstream 62255 13694757 ~ 13696971 (-) True G70063
TU87498 lncRNA downstream 135845 13623115 ~ 13623381 (-) True G70034
TU87421 lncRNA downstream 383347 13304426 ~ 13375879 (-) True G69973
TU87397 lncRNA downstream 456847 13301924 ~ 13302379 (-) True G69950
TU87328 lncRNA downstream 662890 13087608 ~ 13096336 (-) False AMCG00014412
TU87572 lncRNA upstream 8757 13770177 ~ 13772272 (-) True G70094
TU87667 lncRNA upstream 158101 13919521 ~ 13921330 (-) True G70169
TU87744 lncRNA upstream 337944 14099364 ~ 14102156 (-) True G70238
TU87845 lncRNA upstream 1284432 15045852 ~ 15059774 (-) True G70315
TU87890 lncRNA upstream 1477383 15238803 ~ 15242333 (-) True G70346
AMCG00014428 mRNA downstream 16407 13728703 ~ 13742819 (-) True AMCG00014428
AMCG00014429 mRNA downstream 49939 13697335 ~ 13709287 (-) True AMCG00014429
AMCG00014430 mRNA downstream 222857 13531195 ~ 13536369 (-) True AMCG00014430
AMCG00014438 mRNA downstream 231624 13498726 ~ 13527602 (-) True AMCG00014438
AMCG00014432 mRNA downstream 271613 13478348 ~ 13487613 (-) True AMCG00014432
AMCG00014436 mRNA upstream 23495 13784915 ~ 13790135 (-) True AMCG00014436
AMCG00014435 mRNA upstream 67035 13828455 ~ 13846485 (-) True AMCG00014435
AMCG00014431 mRNA upstream 91742 13853162 ~ 13864850 (-) True AMCG00014431
AMCG00014433 mRNA upstream 105223 13866643 ~ 13882123 (-) True AMCG00014433
AMCG00014450 mRNA upstream 162179 13923599 ~ 13929423 (-) True AMCG00014450
TU87063 other downstream 2096733 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2961079 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 4442059 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 5375002 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5600636 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14568319 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 15627870 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18501747 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 18836042 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 18836042 32597462 ~ 32619149 (-) False G73127

Expression Profile