RNA id: TU87727


Basic Information

Item Value
RNA id TU87727
length 2991
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G70221
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14167446 ~ 14171012 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tagaataaaaacatgtttttattattacaaatagaTTTTAACACTGCACTTTTATTCTGAAAATGGCTTTGTGCTTAGTTACTTTATTCTTCTACATACAGTTACaaaccaattttattttatgaaataaggcacttcacatacattttgttaaggAATAAAATGCAGTTAATACATACTGTTGCTGGGTTTTACACATCAAAGGGGTAAACACTAGCCACCCAGTCAGCATTATATTACACTAACAAGCcttgtttgaaaataaagttCTCAAATTGAATCacacttaattatttttctgttggtttgtctcagatttccttttaaaaagaaaaaagaaaagtcaagcTGGGCCAATCAACCATGCAGACAAATCTAACATAATACACAGTGATGACTACTGACTTTGCAATTTGCTTGCAATCATTTTGGAATCAAAGGTAAAATACCTTTTAATCAAACTGAGGTATTGAGCATGAACAAGGATTAAATCTGTACAAAACCAATACCAATTACTGAACACAATTACGTCAATTGTACCACAAAAATGTGGGAGGTCAGTTACATTGAGCCACCTTGGTCACATTACAGATGCATATGTCTGCTACAATGATCCACTTAACAAgagaacaaaatacatgaaatacatgTCATTGTGATTCACTTCTTCGTAATCTTATTTTCAAAAGGATAGTCACATTATTCAGAATGTGGGAATATGGCGTTGATTAACATCTTTATGAGCAGCTTGAAACACAAGCTACTTATAAACAAACATTGGCAAAGAATGTGGATCACAGAAGTATAATTATCTGCGCTGTTTAGtgctattaaatatttaacagttgGACATTCAAGCCACACAATTGGTCACAAACCAATAAAATACTTCACACCAATtgttaatgtgtaaaaagcaaactttgatttagatataaatataaattggtGATAATCAATACCCAgtgatttaatttctgtttagttttttaaagcagCAACTGTTGATGTTAAATCAATGTTTcactataatatacatttctttttaccaactacaataataatgagCATAAAGACCATTCAttagcaaatgcaaacaaagacCAGTAATCAAAACTGGCCGAGGTACACCTGGGACAGGGATTACATCCTACACCTGTAAAGCGAGGGGACATCAGTTCAAAGTTTTCATATCCttaattcaaaacaatgtaATCTGGTGATTATATAAGTATTGTTCACTGTACTATAATTAGTTATAAATGTTCAGAGTAAGCAGAATACTGATTCGGTCTAGGCTGTAAAGACTTTGTTTGATTGCACAGAAGTAAGACTGTGACAGGAACTTCCCTAAGTTTCCTGCTGCACATATGCCCCACTCTCtcattcacacttttttttttttaaagtaaaaccaTTAAGGCTTCATTCATGACAATAAATACTAGTAATATATTcaatgagaaaaaaactaaaacaacagcaaacaaatacacaaaaaaacctccttaattgtgaaatgcagtgccttcaaaaataaacattacatttgaactTAATCACCTAAAATAACAATTCAACCATGTATGTATGACTGTTCCTTTTAATCACCATGACTACATACCTCTTCCTTTAATTAGAACATATTGCTATGCTGTTTCTACTGTCACCTGAGATGTAAAGATGAGCTGGAAGTAAGGCCTGAGCGCATATTCACTTCCAACATCCGCAGTGCTTTACAATTTATATCAAACTTTGAAAATAACTCAATATGTGTGTAGGCCATGCTTAGCTTTTCTCTGAAATTCCTTTTGTCTGAAATCTCCATTTCATTGTGAAACCAGAGTACTGGTAGAAACCAGGAAGttctttctgaaatataatttttcaCAAATTCCAGGGGTGAAAGgattacaaaaagtaaaaaagctTGTATTTAAGTATGAACTGTACATAAAGCTAAATATACCTATGCTTAAATGCATCTTGATATGTTTGTTGTGCACTGTAGAACATGGCATCACTATCgatttgtattctttaaattACTGAGCCTTTTCAGTCTCTGACCTATACTTCCAATATAATGCTGTGAAACTTCAACTTCAATGTTCAGATAAATATACTGATGAGTCATGAAATACCCATAGGATGTAGATAATGTGCTTGTAAAAAtcatagcaataataatatcacaGCAATAGCGTTGCTTTTTAAGAGCAGAAGAGATCACCAGTCCCTGTTGttgaaactaaatattttttttaaattgactttttaGAGGTTTAGGAATTCTGTGCTTTGTAGGGAAGTTAGGAAAATCAAATCCGACTCCGTGTTACTTTACATGACCTATGATGACACCGGGGCCCGAACAGGCTGTCATGATCTCGTCATACTGGGGGGgcgggtctgtgtgaatgtctCCAGCCTCGATCCTCACATCCGTGTGTCCCATGGCTTCTTCATACGAGGGAGGAGGGTCCCCATTGGACAGCCTGCCCGGGGTCAAGTCTGAGCCCACGTAGGCCGAGAAGCCCCCCGTCACCCCACTGTTGGTGCTGAGGTCTGACTGGGGGGAGATGTCAGGGTGGTAGGAGCTGTGGCCTCGCTGGTCCATACCCACCAGGGACAGGTGCCTGTCCCGCCGGCCTGCCGCCTCCCGTCTCTGGCTGAAAGTGGACCCCCTCTGGAAGAGCTTGCGGGAGTGGCACCTCCAGAGAGCCACCAGCACGATGATAATGAGCAGCAGGCCGGCCAGCAGCGGCACAATCAGGTAGACCGAGTGGAACAGGCTGCCTCCCATCTCTATCCCGCTGCCAGAGTTACTCTCCCTGACATACTCCTCCCAAAACCTCTTctgtggtaaaaaaacaaaaaacaaacatcacgttaaaatacatatattcaaaatgcaaaatgtgaagATTCCTTAACTGTCTGAGGAAGACAACCTTCACCGATCGAGTCAAGACTGAAACTATAAATGAT

Function

GO: NA

KEGG:

id description
ko04213 Longevity regulating pathway - multiple species

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 470575 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 482954 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 787042 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 787853 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 832261 13334214 ~ 13335185 (+) True G69959
TU87766 lncRNA downstream 22767 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 26968 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 295692 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1008833 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 1068644 15239656 ~ 15242333 (+) False AMCG00014470
AMCG00014447 mRNA upstream 4124 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014446 mRNA upstream 6604 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014445 mRNA upstream 9720 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014443 mRNA upstream 24373 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014444 mRNA upstream 61952 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014456 mRNA downstream 18552 14189564 ~ 14205014 (+) True AMCG00014456
AMCG00014458 mRNA downstream 52504 14223516 ~ 14235412 (+) True AMCG00014458
AMCG00014460 mRNA downstream 66999 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014461 mRNA downstream 131435 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014459 mRNA downstream 200133 14371145 ~ 14380019 (+) True AMCG00014459
TU86705 other upstream 4158798 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6750852 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6817979 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9515482 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 165846 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1504619 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1504619 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1958513 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2294669 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile