RNA id: TU88073


Basic Information

Item Value
RNA id TU88073
length 1098
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G70491
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15700208 ~ 15703314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCATATTAAGAGTATTTGTTTGCTTATTCAATAAAAGACATGTTGCTTGAAGCTATTTAcagcaaaaaatgaaaaacatgtattttcttgcCTGAGCACATTTCTGaaacaccaataataatacaaataatggtgCAAATATTCTACCTTTTTTATTTGGATTACCTGATcttcatttttatgttgaagAATTAAAAATCACATACCAGAGAAGAATGgtattatttacagtattattattttaatagtaacattagttttttcttaaaaagacattgatcttaaaaaaatacacaggatTTCCAAATATGACATGATGTTTCAGCTCATGAGGTCAGTGTGAAATCCTCCCATCCCTCATAACATCGATGTGCATCCTATCCAGAAGGAAGACCCTGGTAGACGCCTCTCTTCGGAGACAAGGCCAGTCCGTGGAGAGTGTCTAGGTGATGCGGATACACCACACAGaaggaaaacatgcaaaatagGTCAACATTGTACTGGGTGGAAACACCAACGATGGGCTTCAGAGCCTTCAGTAACTAATCTTCGTCTGAGTCGATGTCCTTTCTTGTTGGGAGAGAGCATCTGATTGATGACATCAACTTATCCTCAATCTGTTTCCTAGGATTTTCCTCCAAGTCTGTCTTCACAGCCCCAGCTTCTGAAAGTTTCCACTCCAGTtcttctatttttaaattcatgccCCCAAAGAGCAGTGGTCCAATAAACTGTGCCCTCATATCACCTTCAAGATACACAAATATAGTGGGCAGATTCCTGTCAGGGTAATTGGGTATACAGGTTGTGGAGATTGACTTGAGAAATTTTGTCTGTGGGAATTTTCTTGCAAGCTCAGTTAGGTGCTGATTTATTAAGGTGCAGAGAGGGatgCCTGTTTTATAAAGATGCAGCACAACCCAGATCCCCTCGCCAGCTTTGTTTACTTCTTGTACATAATCCTGACCAGAGATCTCCACTAACTctccaaatgcatttttgatCTGCTTAGCTTTCCACTCAGCTAGCCTTTGTTgtctgaaaatattgaaaacaggaaaattaGAAAAGTTAATCCTTAAATAcagactgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88034 lncRNA downstream 56581 15643619 ~ 15644914 (-) True G70458
TU87985 lncRNA downstream 176481 15522520 ~ 15525014 (-) True G70420
TU87990 lncRNA downstream 194984 15506304 ~ 15506511 (-) True G70425
TU87969 lncRNA downstream 314795 15383633 ~ 15386700 (-) True G70407
TU87964 lncRNA downstream 324721 15374238 ~ 15376774 (-) True G70402
TU88297 lncRNA upstream 509230 16212544 ~ 16214127 (-) True G70660
TU88319 lncRNA upstream 578371 16281685 ~ 16281899 (-) True G70679
TU88331 lncRNA upstream 662810 16366124 ~ 16369464 (-) True G70689
TU88386 lncRNA upstream 762465 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 1018759 16722073 ~ 16723550 (-) False AMCG00014539
AMCG00014498 mRNA downstream 3784 15679795 ~ 15697711 (-) True AMCG00014498
AMCG00014499 mRNA downstream 25368 15673026 ~ 15676127 (-) True AMCG00014499
AMCG00014491 mRNA downstream 74387 15619162 ~ 15627108 (-) True AMCG00014491
AMCG00014493 mRNA downstream 105922 15590989 ~ 15595573 (-) True AMCG00014493
AMCG00014492 mRNA downstream 137494 15526728 ~ 15564001 (-) True AMCG00014492
AMCG00014497 mRNA upstream 46020 15749334 ~ 15751165 (-) True AMCG00014497
AMCG00014511 mRNA upstream 270039 15973353 ~ 15993156 (-) True AMCG00014511
AMCG00014510 mRNA upstream 337919 16041233 ~ 16067562 (-) True AMCG00014510
AMCG00014509 mRNA upstream 451944 16155258 ~ 16164120 (-) True AMCG00014509
AMCG00014515 mRNA upstream 528251 16231565 ~ 16250776 (-) True AMCG00014515
TU87063 other downstream 4039002 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 4903348 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 6384328 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7317271 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 7542905 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 12626425 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13685976 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 16559853 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16894148 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16894148 32597462 ~ 32619149 (-) False G73127

Expression Profile