RNA id: TU88319


Basic Information

Item Value
RNA id TU88319
length 215
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G70679
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16281685 ~ 16281899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGattttacatttctcatttttgtattttttccacccagtttatgtttatataaagTTACGGTTCTGGAATGTGCTTTAAGAATATGGATTGAAGTTGAGGAGGCACAATAAATTATGACCGCTTGCATATAGGCAGGGTTTTGGTCTCATGAACAAGAATGATGACCACTTTTAAGTCTGCATCCTTGGTGTCATTTAGATGGTGGTTCTGAG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88297 lncRNA downstream 67558 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 578371 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 579349 15700208 ~ 15702336 (-) False G70491
TU88034 lncRNA downstream 636771 15643619 ~ 15644914 (-) True G70458
TU87985 lncRNA downstream 756671 15522520 ~ 15525014 (-) True G70420
TU88331 lncRNA upstream 84225 16366124 ~ 16369464 (-) True G70689
TU88386 lncRNA upstream 183880 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 440174 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 1002420 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 1067537 17349436 ~ 17350972 (-) True G70898
AMCG00014515 mRNA downstream 30909 16231565 ~ 16250776 (-) True AMCG00014515
AMCG00014509 mRNA downstream 117565 16155258 ~ 16164120 (-) True AMCG00014509
AMCG00014510 mRNA downstream 214123 16041233 ~ 16067562 (-) True AMCG00014510
AMCG00014511 mRNA downstream 288529 15973353 ~ 15993156 (-) True AMCG00014511
AMCG00014497 mRNA downstream 530520 15749334 ~ 15751165 (-) True AMCG00014497
AMCG00014521 mRNA upstream 18734 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014520 mRNA upstream 26389 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014519 mRNA upstream 34635 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014518 mRNA upstream 93521 16375420 ~ 16376973 (-) True AMCG00014518
AMCG00014528 mRNA upstream 98995 16380894 ~ 16409288 (-) True AMCG00014528
TU87063 other downstream 4619192 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5483538 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 6964518 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7897461 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8123095 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 12047840 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13107391 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15981268 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16315563 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16315563 32597462 ~ 32619149 (-) False G73127

Expression Profile