RNA id: TU88954


Basic Information

Item Value
RNA id TU88954
length 4086
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G71136
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18688548 ~ 18692633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGACTGGAGAGTTTAAAACCAAACTAACTGGCTGACACACTTCAAATTGGCTTCATATTGAAATTGATTATGGTAATCACTGGTATATAATAACATCTCAGTTTAGCCTTCCACTTTAAGAATCAATGCACTATAAACTTGGGAATACTGACTGCAAAATTACAAGTTACAACAATAAGCTGTACCTTACTTAGCTTCTCTTGCAGCAGATCAATATACTCAACAATGCGAGGGTTGactatcatttttattttatttaaagaaatagaaaaaaaacaagcaaacaaataataatctaaaaagACAACACCTGGTTAGTTTTCTaattacaataaatcaatatatagaGCTATAAAGTTTTTGCAAAACTACCTCATCAAATAGAACgtacaaattgaaaacaaaacaaaaaattgaggaaagaaattaatttgaacGTGAAAAGCTGCAGAGACTGTTTTTCCTATACAATAAGCCAGGGGTTTCAGTTGATCTCTTAATTATTAAGGCTTATGGGACACTTAAACCATTAAGCAATGCTTTGGAGAATAATAGACGCTGGCATGCAGAGAATTGTTAAGAAAGGCAACAATGCTATCATATTCCTGATGAAGGAAtgtgtttgcatatttatttccattaaaaggaGGACTCTTCACTGTGAGCCTGCTATGCAGCTGTGTTctggacctttttttttttattcttcaagGCTGGGAAAATATTCGTAATCTTCGAAGTCCTGTACAAGCCAGGCAGAGACAGCTGGGCCAGGGGTGGAGGAGCTCAGCGGGGCAGGACTGTCATAGCGAACGGGGGCAGTGGTGGAATCTGTACAACTAGTTCTCCGCCTGCAGTTACATATTCCTTGTCCAtgcaatatacaatacacacataacttttgaaaaataatcctAGTTGTATTCCCCTGCCTTTGTTTTCTGAAAGCCTCTTTAACTTTTCTGCagacacaaatatacatttctgttgtatGACATCTGAAAGCGGTGATGAATGGTAAAGAGGTTTTAGTTAGCCAGAAAACCTGAGTATATCACTAGACGGTTCATTGGAAAGAAGGGCATAATCCCTGATGGCACCCATGTAAAGAGAAGCACTCTGGTCCCGCTGTTCACACAAGCAGTCGATATACTGCAGAAGTCAGCCCCCTTAAGGCAAAAAGCATGCTTGCCTAACGTGATTAGCCGAGTGGGAAAGCATGAGAAAAACTTGGCAAAGTCAAAGGGGAAGCTGTCACGACTAACCCTATTAATCACCCCAGTAACCCCACATGTCTATTAATGAAGTGCTATGAGACCCTTACACATGCTTTCTTGTGAAGATGCCAGAAGTTTGGAGGTTCGTCGGTCCCAAGTGCAACATGTTCCTCTCCACATCGAAAGAGACCGTTTAGACAGGCAGAGAGATCTCACCGTGCAcgtcttttaaaatgatataatacGTGCAGAACCGAAGGAGTAAAGTCAGGAGGGCATTGAAATTAAAGTCAGTGTGAGTACGAATCTATAAAACAAACTGGTGTCCACTGAAGAATTTCCACTCATTCTTAGAACTGTGGTCTTTAGTCACTTCCTTTTAGAACACCATGGGGAATTATATGCAAATTTCAATCACACTTTCTAGAAATAATTTCCAATATAAGCAGTATTCTCTTTTGATCACATGTCCCTTTATACGTgtgatttgaaataattattcccAGGTTTAACTGATTCCACCCTTCTCTTTGATAAACTATATGTATAAAGTCTACCACCTGACTAAGGAATAGAGGGCCAGAGGTGTAGGAGAGTTGCTCATCATTCAATACTTCACTAGCGACCAACAATTAAGCTTCAGTGCTCGACCTTCCTTCAGTCTAGATCAACAAGTCTTTCCAGATGCggattttaataaaacaaataggacACCCCATGCTACAAGGACTAAATGAAGAAGACAATTATATAAACCAACTATAAAATATGATCCATTATTCATTACTGCAAAACATATTGGCATGGCTAACAAaacatctgccaataaatatatttagtcaTTTCTCAGTATTATAAAGACTTATTCCATTcttaaactttttttccctctatgTACAAAAGGCATTTACATGAATTATATCCAGCtgagttctgggcaccacatgAATAGATTTGCTTCTTGAAAGCTGAAACTTCCCCTGCGATAGAGAGCAAACCAATAATCCAAATAACACATTACATCACCTGTTTGAACAATCACACAAGTCCCCCATAAGCTGATGATTCTTCCACCACAAAAGTCAACATTTTGCAAAGATACCAAGCTGTCACATTATGAGGATTATCTCAGAAAACACCCTTAAATACCTATACAGGGGTTTAACTTCCTTCAGATTatattcaaaaaaaaaaaatcagtttgttcTATGGAGATATGTTAGTGGCCCACACTAAAATACATGACCTATGCGTCTAATATTTACAAATGACCAGTTTAATCTCATTGAACCTTGGACAATGCTCAAATTGGAGATTCATACTAGTAGGAATTCTGCCAGGATGTTGTTTAGGGTCTTACTCAACATTTACACCCCAGTTGCTACTGCCTTTTTTGGTGTCCTTTCTTCTAATAAATGAGCTAATAATGACTCACGCCTAAGGCAACGTAACCACCAAGAGTCGCTTTAAAGTGTTGTTCTGGACAGCTGGAATCAGACAGAATTCAAGGATGAAGTACGGCGATACATCACGGGCActgctgtattttgtgtcaCAATCTCTCACAGTGCTTTCCCAAGAGTGGAAACTGTCTCGTTTGCTATGTAGGCTGAGATTCCTGGAGCCCTTTCCCCGACCCTGTGACCTGCTTCTCTACTTCCTTTTCCCGACGTGGCAGTTCTCACATGTCTCTCCACACTCGATGCCGATGTCAGGGCTCTGACCCAGGCAGCAGTCTCCTCCTGTTACAGACAGTGAGTCAGGGAACACTCAGCTCCTGCAAACTGAGCATGCCGACCAAACCGCCCCACAGTCTGCCTCCGTGGCACCGAGTCTGGGCCGGTGCGCACAGTTGTCAAGTCCCCAGACATTATCTGTTATACTGTGTGTCCACTGCAGCGCTCCCACAACAGTTTACAGAATGATACGAATACTTTCCTTGATGTTTGTGTGACTAGTTGTCCAATTTGCTGCTGTTAATATCTGATTGTCTGTGAAATTGATTGCGACAGGACATTCATGTCTTACACGTTTTCCTCTATGGAGGAAAGCCAATGTCCTTGACGCACATTAGTGGAACAATACacaatagttttgtttttccggTGCCGTCATAAAGAGATTCCAAGTAGGTAGAAAACTGTAAAAGACCTGCGCTCATTATTTCAGGAATGTGCCAGATTACGAGGGGGTTTCACTTTgagaaccaaaacaaatctgagcGAGGGCAGATGAGACCATGTGACCATTGGCTACGGCTGCTTCTCGTGTGTTTACTCCAGCCCAATTTCAGAGAGAGGGATGCGTGCTGATTCAAGTCAATCCATACAAGGGCAGCATGCAAAGGTAATCACTTGTGACACAGTGCCTTacaactcacacacacgcatgtcCGTTATCGGGTTACATAAGCACCGCTTCGTAATTAACAGGGTACACTTTCTACAGAGGAATCTGGTGAATTGCATACTCGCGCTCAATCAAGCCGTAGTAAACAAACACGTGAGATCATTGGAAAACGCAGGTCCTGGGAGAGTAGCAATCACTGCAGAGGAAGCAGAAgcacttttttctaaatgatCTCTTATCAGACAACCTGTGTGGTTCTTGTTTCCAGTCCTGGCTCTCTTGAACTATTACTCTGGAATTTGGAATTACTGCAAGAGTATTCCATTCAGAGAGggaaaaaacgaacaaaaaaaaacctcattCACTGGTTTAGCAGCCGCATAACTTGGTAAATGACCTAAACATGACGTGCATCTTAAGTTCATAAATATCACTGAAGCATCACtcttaaaaatacagttcaacTTCATATCATTTGAAGCTAACTAGTAATAAAAGGTACCATAAATTAGCCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 210520 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 220213 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 1037546 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1197941 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1201498 17418439 ~ 17487050 (+) False AMCG00014553
TU89012 lncRNA downstream 208592 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 355325 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 525684 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 525684 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA downstream 525684 19218317 ~ 19222919 (+) False G71283
AMCG00014587 mRNA upstream 14216 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014584 mRNA upstream 21422 18662208 ~ 18667126 (+) True AMCG00014584
AMCG00014581 mRNA upstream 29487 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014586 mRNA upstream 49944 18636706 ~ 18638604 (+) True AMCG00014586
AMCG00014582 mRNA upstream 55858 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014592 mRNA downstream 89424 18782057 ~ 18786527 (+) True AMCG00014592
AMCG00014591 mRNA downstream 110773 18803406 ~ 18845971 (+) True AMCG00014591
AMCG00014596 mRNA downstream 160675 18853308 ~ 18878273 (+) True AMCG00014596
AMCG00014594 mRNA downstream 197139 18889772 ~ 18900200 (+) True AMCG00014594
AMCG00014595 mRNA downstream 256680 18949313 ~ 18963043 (+) True AMCG00014595
TU88725 other upstream 414188 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1240095 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2219435 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2555746 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3008760 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4162709 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9142870 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9176070 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9609740 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11158817 29851450 ~ 29851821 (+) True G72605

Expression Profile