RNA id: TU88975


Basic Information

Item Value
RNA id TU88975
length 510
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G71157
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18668801 ~ 18669655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCCTGATCAAGTCAATCCCATGACATGATATGCACTTTGTCATTTGTGTTGCACTGTGTTAAGCTTTTAAACATGAACACCCCCCTAACCAGCTGATTGCAGACGCAGACAGGTGGCCTGTAGGACCCATAGGCACTTCACGGCCATGTGCGCTAGCTAACACAGCCGCAGCATCTCACTCGGCCGTCCTTACTCTCCGAGTCGCTGATGCCGCTGTCGCTGACGCTGGCGCTGCTCCTCCTCTTCATGGTCTTCAGGTGCTCATCGTATCTGAAATGCCTTTTTTCCACAGGAGAGGAGAAGTCTTCAATAACCGCGTCAAACTCGCACAAAACTGCGCTCAGGTCCTCATCTCCGTCCAGAAAGAGACCTTACTTTGCGGTTTCATCTTAGGAGACTTCATGTGATCTGTTTGTTGACGGTTGGATATATCCAATACAGAAAGACGAGATCAAGACACTCCGCGGACAGACTGTGCAGTTTCACTGTGTGCTGCGGCTGAGCGCCC

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88951 lncRNA downstream 4170 18664264 ~ 18664631 (-) True G71133
TU88747 lncRNA downstream 337701 18329197 ~ 18331100 (-) True G71016
TU88673 lncRNA downstream 646706 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 664778 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 1052896 17600461 ~ 17615905 (-) False AMCG00014559
TU88981 lncRNA upstream 16843 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 181069 18850724 ~ 18851111 (-) True G71174
TU89007 lncRNA upstream 204950 18874605 ~ 18878253 (-) True G71179
TU89158 lncRNA upstream 521730 19191385 ~ 19191632 (-) True G71284
TU89162 lncRNA upstream 532148 19201803 ~ 19202950 (-) True AMCG00014604
AMCG00014585 mRNA downstream 24131 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014579 mRNA downstream 111513 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014576 mRNA downstream 181521 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014577 mRNA downstream 190879 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014578 mRNA downstream 200519 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014588 mRNA upstream 26420 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014589 mRNA upstream 51150 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014590 mRNA upstream 107121 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014593 mRNA upstream 262482 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014597 mRNA upstream 301781 18971436 ~ 18999017 (-) True AMCG00014597
TU87063 other downstream 7006308 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7870654 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9351634 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10284577 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10510211 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9660084 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10719635 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13593512 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13927807 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13927807 32597462 ~ 32619149 (-) False G73127

Expression Profile